Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11610 1422 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 1212 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1120 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1117 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G61300 1095 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 1091 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G22610 1088 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1079 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 1026 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 979 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158000 [exp] 1806 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1499 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 1471 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1152 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1123 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1110 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1094 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1091 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1087 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018839 [exp] 1482 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1451 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1107 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1106 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1026 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1024 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 966 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 918 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10010658 [exp] 785 / 0 AT5G17980 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 756 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G081700.1 pacid=42762874 polypeptide=Potri.014G081700.1.p locus=Potri.014G081700 ID=Potri.014G081700.1.v4.1 annot-version=v4.1 ATGAATAATCTCAAGCTGGGAGTGGAGGTAGTGGGCGCCCATGACCTTATGCCCAAAGATGGGCAGGGCTCAGCCAATACGTTTGTTGAGCTTCGTTTTG ACCATCAGAAATTTCGCACTGCTATTAAAGACAAAGATCTCAGTCCTGTTTGGAATGAAAGCTTCTACTTCAACATCTCTGATCCAAACAAACTTTCTAA CCTCAGTCTCGAGGCCATTGTCTACCACCATAACAGAGAGAACAGCTCCCAATCCATCCTTGGAAAAGTTCGTCTCACTGGGACATCTTTTGTACCCTAC TCGGATGCTGTTGTTTTGCACTACCCACTTGAAAAACAAGGCATTTTATCTCGTGTCAAAGGAGAGCTTGGTTTGAAAGTATTTGTTACGGATGGTCCTT CTATAAGATCCTCAAACCCACTCCCTGCTATGGAATCTTCTCCGTTTTCAGACTCTCGTGCTACCCAAACTCAAGCTTCAGAACAACAGATTCCAAATGT GGCCCAAAAAATGTTTTCTGACGACAAATCTGAGTCAAGACAAACATTTCATCACCTTCCAAACCCTAGTCAGTCACAGAAACAGCAGCATGTTCCACCT GCAGCAACTCAGCCACCAATGGATTATGGGATTCATGAGATGAAATCTGAACCTCAGGCTCCAAGAGTTGTTCGCATGTTCTCAGGCTCGTCAGCACAAC CTGTCGATTACGCACTTAAAGAGACTAGTCCTTTTCTTGGAGGGGGGCAAATAGTCGGAGGGCGAGTCATACGTGGAGATAGACCTTCCAGCAGCTATGA TCTTGTTGAACAGATGAAGTACCTTTATGTGCGAGTTGTGAAGGCTCATGACCTTCCTACCATGGATGTGACTGGGAGCCTTGATCCATATGTTGAAGTA AAAGTTGGGAATTATAAAGGAATCACAAAACACTTTGAGAAGAACAAAAACCCTGAGTGGAATGAGGTGTTTGCCTTTGCAGGTGATAGATTGCAGTCAT CTGTATTGGAAGTCATGGTCAAGGATAAGGATCTGGTTAAGGATGACTTTGTTGGGATTGTAAGGTTTGACAGGAATGAGGTTCCTACTAGGGTTCCACC TGATAGTCCATTGGCTCCAGAATGGTATCGGCTTGAAGACAAGAAAGGAGAGAAAGTGAAAGGGGAACTGATGCTTGCTGTCTGGTATGGTACTCAAGCT GATGAGGCATTCCCTGATGCTTGGCACTCAGATGCAATTTCTCCTGATAGTTCTTCCTTCATCTCTACACTTATCCGCTCTAAAGTATATCATTCTCCAA GACTGTGGTATGTCCGTGTTAAGGTGATTGAGGCTCAAGACCTAGTGGTATCTGACAAGAATCGGTTTCCAGAAGCTTATGTCAAGGTACAGATTGGTAA CCAGGTTTTGAAGACAAAGATGGCTCAGAGTCGGACAATGAATCCAGTGTGGAATGACGAGCTAATGTTTGTTGCTGCTGAACCCTTTGATGATCATCTG ATCCTTGTGGTTGAAGACCGCACTGGGCCCAACAAAGATGAGAGCATAGGGAAGGTTGTTATACCATTGAACACTGTTGAGAAGCGTGCTGATGATCACA TTATTCGTAGTCGGTGGTTCGGCCTTGAAAGGTCCGTGTCAGCTGCCATGGATGAGCATCAGGTGAAGAAGGATAAGTTTTCTAGTAGACTCCATCTGCA AGTTGTGCTTGATGGAGGGTACCATGTGCTTGATGAGTCAACTCACTACAGCAGTGATCTTCGACCAACAGCAAAGCAGCTTTGGAAGCCATCAATAGGT GTTTTGGAGCTTGGGGTTTTAAATGCTGAAGGGCTCCACCCAATGAAAACAAGAGAGGGGAAGGGTACCTCAGATACATACTGTGTGGCAAAGTATGGTC AGAAATGGATTCGGACTCGAACCATAATCAACAGCCTCAGCCCAAAATACAACGAGCAGTACACATGGGAGGTTTTTGATACTGCAACAGTTCTCATTGT AGGGGTTTTCGATAACAACCAGCATGGTGGTTCCAATGGTAATAAAGACACAAAAATTGGCAAGGTTCGGATTCGACTCTCTACCCTTGAAACTGGTCGT GTTTATACACATTCATACCCGCTGCTAGTCCTTCACCCTTCTGGTGTCAAGAAGATGGGTGAGTTACATCTAGCCATAAGATTCTCCAACACATCATTCA CAAACATGGTGTTTCAATACTCACGACCACTTTTGCCAAAGATGCACTATGTAAGGCCATTGACTGTAATGCAGCAGGACATGCTACGTCATCAGGCTGT CAATGTAGTAGCAGCTCGTCTTGGTCGGTCTGAACCTCCTCTTAGGAAAGAAGTCATAGAATACATATCTGATGCAGACTCGCATCTTTGGAGCATGAGG CGTAGCAAGGCAAACTTCTTCAGGCTGATGTCAGTTTTCTCGGGATTACTTTCTGTAGGAAAATGGTTTGGTGAAGTTTGCATGTGGAAGAATCCCATCA CTACAGTTCTAGTACAAATCCTCTTTGTTATGCTTCTCTATTTTCCAGAACTGATTTTGCCAACTGCGTTTCTATACATGTTTCTGATAGGGGTTTGGAA TTATCGTTTCCGACCACGTTACCCTCCCCACATGAACACAAGAATTTCTCATGCAGATGCAGTGAATCCTGATGAGCTTGATGAGGAATTCGACACATTT CCATCAAGACAGAGTCCAGAGATAGTTCGTTTTAGGTATGATCGACTAAGGAGTGTGGCTGGGAGGATCCAGACTGTTGTGGGTGATGTGGCTACCCAAG GAGAGCGGGTTCAAGCGCTACTAAGCTGGAGGGATCCTCGCGCCACAACTATCTTCTTGATTTTCTGTCTAGTGGTTGCCATAGTGTTGTATGCAACACC TTTTCAGGTGCTTGCTCTTCTTGGGGGGTTTTACTTTATGAGGCATCCTAGGTTTCGTCACAAGACTCCATCAGCACCAATTAATTTCTTCCGTCGTCTG CCGGCGAGGACAGATAGTATGTTGTGA
AA sequence Show only first row Show all	>Potri.014G081700.1 pacid=42762874 polypeptide=Potri.014G081700.1.p locus=Potri.014G081700 ID=Potri.014G081700.1.v4.1 annot-version=v4.1 MNNLKLGVEVVGAHDLMPKDGQGSANTFVELRFDHQKFRTAIKDKDLSPVWNESFYFNISDPNKLSNLSLEAIVYHHNRENSSQSILGKVRLTGTSFVPY SDAVVLHYPLEKQGILSRVKGELGLKVFVTDGPSIRSSNPLPAMESSPFSDSRATQTQASEQQIPNVAQKMFSDDKSESRQTFHHLPNPSQSQKQQHVPP AATQPPMDYGIHEMKSEPQAPRVVRMFSGSSAQPVDYALKETSPFLGGGQIVGGRVIRGDRPSSSYDLVEQMKYLYVRVVKAHDLPTMDVTGSLDPYVEV KVGNYKGITKHFEKNKNPEWNEVFAFAGDRLQSSVLEVMVKDKDLVKDDFVGIVRFDRNEVPTRVPPDSPLAPEWYRLEDKKGEKVKGELMLAVWYGTQA DEAFPDAWHSDAISPDSSSFISTLIRSKVYHSPRLWYVRVKVIEAQDLVVSDKNRFPEAYVKVQIGNQVLKTKMAQSRTMNPVWNDELMFVAAEPFDDHL ILVVEDRTGPNKDESIGKVVIPLNTVEKRADDHIIRSRWFGLERSVSAAMDEHQVKKDKFSSRLHLQVVLDGGYHVLDESTHYSSDLRPTAKQLWKPSIG VLELGVLNAEGLHPMKTREGKGTSDTYCVAKYGQKWIRTRTIINSLSPKYNEQYTWEVFDTATVLIVGVFDNNQHGGSNGNKDTKIGKVRIRLSTLETGR VYTHSYPLLVLHPSGVKKMGELHLAIRFSNTSFTNMVFQYSRPLLPKMHYVRPLTVMQQDMLRHQAVNVVAARLGRSEPPLRKEVIEYISDADSHLWSMR RSKANFFRLMSVFSGLLSVGKWFGEVCMWKNPITTVLVQILFVMLLYFPELILPTAFLYMFLIGVWNYRFRPRYPPHMNTRISHADAVNPDELDEEFDTF PSRQSPEIVRFRYDRLRSVAGRIQTVVGDVATQGERVQALLSWRDPRATTIFLIFCLVVAIVLYATPFQVLALLGGFYFMRHPRFRHKTPSAPINFFRRL PARTDSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.014G081700 [exp]	0	1
AT3G60810			unknown protein		Potri.002G148400 [exp]	2.44	0.8356
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	6.63	0.7945
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.005G213500 [exp]	8.66	0.7916	Pt-SULTR3.5
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	14.56	0.8215
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.010G063500 [exp]	15.49	0.7878	Pt-AMT1.4,1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.007G031100 [exp]	17.49	0.7622
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	17.88	0.7977
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	18.22	0.8171
AT5G07670			RNI-like superfamily protein (...		Potri.002G143200 [exp]	19.97	0.8214
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	23.10	0.7983	Pt-GT4.1

Compare expression of checked genes

Potri.014G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.