Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45850 229 / 8e-73 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 198 / 9e-61 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 184 / 2e-55 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 172 / 7e-51 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 167 / 1e-48 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT1G63480 162 / 8e-47 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 159 / 2e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 155 / 1e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 150 / 5e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 149 / 9e-42 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158200 [exp] 441 / 3e-156 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.003G126500 [exp] 241 / 9e-78 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.001G104900 [exp] 232 / 7e-74 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 187 / 4e-57 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 186 / 3e-56 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 182 / 6e-55 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 182 / 6e-55 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G005000 [exp] 177 / 1e-52 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.003G090900 [exp] 175 / 1e-51 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037858 [exp] 288 / 7e-96 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 285 / 2e-94 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10008533 [exp] 196 / 1e-59 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 186 / 4e-56 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 171 / 2e-50 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 170 / 9e-50 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 166 / 2e-48 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10015027 [exp] 164 / 8e-48 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 160 / 3e-46 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 160 / 3e-46 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G082100.1 pacid=42764560 polypeptide=Potri.014G082100.1.p locus=Potri.014G082100 ID=Potri.014G082100.1.v4.1 annot-version=v4.1 ATGGATCGAAGGGATGCTATGGCGATTTCGGGCTCTGCCTCATTTTATATGCACAGAGGGATAACTAGTTCTGGTAGTATGAATGTTTCATCTAACATAA ATACTTTATCTAACACAAATGTAGCATTTCAACCAAATATTGGAGCCAATACCATGGGATCGACATTACCAATGGAGCATCCAGTAGCAATTTCACCCCA TGGAGTCAATGTGGGTGTGCCATCTACAATGCCACCCTCCGGTGAACCTGTAAAAAGAAAAAGGGGAAGGCCCCGGAAATATGGACCTGATGGGGCTGTA TCATTGGCACTGTCTTCCTCATTGTCTACTCATCCAGGGACAATAACCCCATCCCAGAAGCGGGGTAGAGGGCGGCCACCAGGGACTGGGAGGAAGCAAC AATTGGCTTCCCTTGGTGAGTGGCTGTCTGGTTCGGCTGGGATGGGTTTTACTCCACATATCATCACTATTGCAGTAGGAGAAGACATTGCAACAAAAAT AATGTCATTCTCACAGCAGGGTCCAAGAGCTGTATGCATCTTGTCAGCAAATGGTGCTGTTTCTACCGTGACTCTACGTCAGCCATCAACCTCTGGAGGC ACTGTCACATATGAGGGACGCTTTGAGATTTTATGCTTGTCAGGCTCTTACCTGCTCACTAATGATGGTGGCTCTCGCAATCGATCTGGTGGTTTGAGTG TCTCCCTTGCTAGTCCTGATGGTCGTGTTATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGCCCTGTTCAGGTGATAGTCGGGAGTTTCTTGTG GGGTGGTGGTTCAAAGACAAAGAACAAGAAAGTGGAAGGTCCAGAAGGAGCCAGAGACTCGGACCATCAGACAGTTGAGAATCCAGTAACTCCAACTAGT GTTCAACCAAGTCAAAATCTTACTCCAACCTCCTCTATGGGCGTCTGGCCTGGTTCACGGCCAGTGGATATGCGTAGCACCCATGTTGACATTGATCTGA TGCGTGGATAA
AA sequence Show only first row Show all	>Potri.014G082100.1 pacid=42764560 polypeptide=Potri.014G082100.1.p locus=Potri.014G082100 ID=Potri.014G082100.1.v4.1 annot-version=v4.1 MDRRDAMAISGSASFYMHRGITSSGSMNVSSNINTLSNTNVAFQPNIGANTMGSTLPMEHPVAISPHGVNVGVPSTMPPSGEPVKRKRGRPRKYGPDGAV SLALSSSLSTHPGTITPSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPRAVCILSANGAVSTVTLRQPSTSGG TVTYEGRFEILCLSGSYLLTNDGGSRNRSGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIVGSFLWGGGSKTKNKKVEGPEGARDSDHQTVENPVTPTS VQPSQNLTPTSSMGVWPGSRPVDMRSTHVDIDLMRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Potri.014G082100 [exp]	0	1
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.004G168100 [exp]	3.00	0.7886
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	5.09	0.7519
AT5G10310			unknown protein		Potri.007G095400 [exp]	14.28	0.7361
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.009G058100 [exp]	20.00	0.6629
AT1G75550			glycine-rich protein (.1)		Potri.005G234601 [exp]	50.73	0.6896
AT1G63770			Peptidase M1 family protein (....		Potri.003G129500 [exp]	65.36	0.6573
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	69.93	0.6658
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Potri.001G248200 [exp]	94.48	0.6052
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	104.95	0.6660
AT5G14210			Leucine-rich repeat protein ki...		Potri.001G333300 [exp]	174.89	0.6289

Compare expression of checked genes

Potri.014G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.