Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00710 826 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 787 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 781 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 748 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 727 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 689 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 625 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 593 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 575 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 555 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G158400 [exp] 964 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.001G104700 [exp] 806 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 803 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.006G093900 [exp] 780 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 767 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.009G039500 [exp] 734 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.001G246400 [exp] 734 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 624 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 623 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037856 [exp] 834 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 826 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10008530 [exp] 815 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 811 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 794 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10018849 [exp] 776 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10027743 [exp] 751 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 744 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 730 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10016454 [exp] 692 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G082400.1 pacid=42763525 polypeptide=Potri.014G082400.1.p locus=Potri.014G082400 ID=Potri.014G082400.1.v4.1 annot-version=v4.1 ATGGGGAGTCAGTGCACTAAGCTTACTCCTTGTTGCTTAGATTCACAGTTCAAGGCAGCTGTTGTTGAAGTTCCCAGTGTTGGAAATGAAGAGAAGAGTG AGGTTAATGACTTGCCTACATTCCGGGAATTCACATTTGAGCAGCTGAAAAATGCAACATCTGGTTTTGCAGTAGAAAATATCGTGTCTGAGCATGGGGA GAAGGCTCCTAACGTTGTTTACAAAGGGAAGCTGGAAAATCAGAGAAGGATTGCTGTTAAACGATTCAATAGAATGGCTTGGCCTGATGCTCGACAATTT TTGGAGGAAGCAAGATCTGTTGGCCAGCTACGGAACAATAGATTGGTAAATTTGCTTGGTTGCTGTTGTGAAGGTGATGAGAGGCTGCTTGTAGCAGAAT TTATGCCCAATGAGACACTTGCTAAACACCTTTTCCATTGGGAAACACAACCTATAAAATGGGCGATGAGATTAAGAGTTGTTCTACATCTTGCAGAAGC TCTAGAATACTGCACAAGTAAAGGGCGTGCCCTTTACCATGACCTTAATGCCTATAGAATTTTGTTTGATGAGGATGGTAATCCAAAACTATCAAGCTTT GGCCTCATGAAAAACAGCAGGGATGGAAAAAGTTATAGTACGAATCTAGCTTTTACTCCTCCAGAGTATTTGAGAACTGGGAGAGTAACTCCAGAGAGTG TGATATATAGCTTTGGCACTCTTTTGCTTGACCACCTCAGTGGAAAGCATATCCCCCCAAGCCATGCCCTTGACTTGATACGGGATAGAAATCTTCAGAT GTTGACAGATTCTTGCTTGGAAGGACAGTTTTCCAATGATGACGGGACTGAGTTAGTACGCTTGGCTTCTCGATGTTTGCAGTATGAACTCCGAGAACGA CCAAGTCTGAAATTCTTAGTTGCTGCTTTGACTCCTCTTCAGAAGGAAACTGATGTTGCTTCTCATATCTTGATGGGAATCCCGCATAGTGCTTCATCCT CACCTTTGTCACCATTCGGCGAGGCATGCTTAAGAAAGGACCTGACAGCCATACATGAGATCTTAGACAATATTGGATATAAAGATGATCAAGGAGTGGC AAATGAGCTCTCATTCCAGATGTGGACAGACGAAATGCAGGAAACATTAAATACAAAGAAAAAGGGTGATGCTTCTTTCAAGCAGAAGGACTTTAGAGTT GCAATTGAGTGTTACACTCAGTTCATTGATGTGGGAACTATGGTTTCGCCAACTGTTTTTGCACGGCGGAGTCTGTCCTATCTCATGAGTGACATGCCTC AGGAAGGTCTAAGTGATGCAATGCAAGCCCAAGTCATTTCCCCTGTATGGCACGTGGCATCTTATCTTCAGGCTGTTGCTCTTGCTACACTTGGAATGGA AAATGAAGCACATGCAGCACTCAAGGAGGGTACAAATATTGAAGCCAAGAAGAATCAGGACTCTGGACAAAAGTGA
AA sequence Show only first row Show all	>Potri.014G082400.1 pacid=42763525 polypeptide=Potri.014G082400.1.p locus=Potri.014G082400 ID=Potri.014G082400.1.v4.1 annot-version=v4.1 MGSQCTKLTPCCLDSQFKAAVVEVPSVGNEEKSEVNDLPTFREFTFEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNRMAWPDARQF LEEARSVGQLRNNRLVNLLGCCCEGDERLLVAEFMPNETLAKHLFHWETQPIKWAMRLRVVLHLAEALEYCTSKGRALYHDLNAYRILFDEDGNPKLSSF GLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDHLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDDGTELVRLASRCLQYELRER PSLKFLVAALTPLQKETDVASHILMGIPHSASSSPLSPFGEACLRKDLTAIHEILDNIGYKDDQGVANELSFQMWTDEMQETLNTKKKGDASFKQKDFRV AIECYTQFIDVGTMVSPTVFARRSLSYLMSDMPQEGLSDAMQAQVISPVWHVASYLQAVALATLGMENEAHAALKEGTNIEAKKNQDSGQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.014G082400 [exp]	0	1
AT4G34270			TIP41-like family protein (.1)		Potri.009G093200 [exp]	6.92	0.7231
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	12.12	0.7564	CAP1.1
AT3G19240			Vacuolar import/degradation, V...		Potri.004G141300 [exp]	15.68	0.6845
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.006G103400 [exp]	17.74	0.7248
AT4G38640			Plasma-membrane choline transp...		Potri.004G173600 [exp]	18.00	0.7088
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.016G119400 [exp]	22.91	0.7032
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	24.08	0.7269
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	24.89	0.7281
AT2G16250			Leucine-rich repeat protein ki...		Potri.009G116300 [exp]	25.09	0.7140
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	30.14	0.7221

Compare expression of checked genes

Potri.014G082400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.