Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61320 454 / 4e-159 Bestrophin-like protein (.1) AT2G45870 425 / 2e-147 Bestrophin-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030389 [exp] 495 / 4e-175 AT3G61320 496 / 1e-175 Bestrophin-like protein (.1) Lus10037849 [exp] 491 / 2e-173 AT3G61320 495 / 2e-175 Bestrophin-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01062 [poplar] [flax] Bestrophin Bestrophin, RFP-TM, chloride channel
Representative CDS sequence Show only first row Show all	>Potri.014G082900.1 pacid=42763557 polypeptide=Potri.014G082900.1.p locus=Potri.014G082900 ID=Potri.014G082900.1.v4.1 annot-version=v4.1 ATGTCACAACCCTCAAACCCTCTCAAACCTCCACTCACCAACATCTCGCTTTCTTCCAGATTTACCCCCAAAACTCCCCTCAAACTACCCCTAACTACCT TCCCCTCCAAACCCCTAAAGGCCAGCACTCCTGCCTTCAAGACCCTTTCCTTTAACTCCCAAACCCCACCAAAAAAACCCTCTAAAGCTATAACCATAAC CTCTCTTCTACGAGCTATCCCTGACTGGGCTGATAGAGTAAAAGAGAGAGGAATGCGAAAAAAGAGATCTTTGTACAACCATGAAAAATGGGTTGAACAT CGAAGTTCTTTTCGCCACGTAAGGCATTTACTTTCAAGTTTATCTTCGCGGGTGGTTTTGTCATTGGTCCCTCCAGTTATTGCCTTTACCTCGGTTGCTG TGGTTGTAGCAAGTTATAATTCTGCTGTGGAAATGCATTTCTTGCCAGGTTTTTTCCCTGTTTTAAGAACCTCTTCACTGCCTTATCAGTTGACAGCTCC TGCATTAGCACTGTTGTTGGTGTTTAGGACTGAAGCATCTTATTCGAGGTTTGAAGATGGGAAGACGGCCTGGACTAAGGTGATTTCTGGGACTAATGAT TTTGCTAGGCAGGTTATTTCTGGGGTTGATGGTTCCAGTAATTCTGCCCTTAAAAGTGAGCTCTTGCGGTATATTATGGCATTCCCCATAGCACTTAAGT GCCATGTTACTTACGGTTCAAATATTGGCCAAGACCTCCAAAATCTGCTCGAAGCAGGTGATCTAGCAATAGTTCTCAAATCTCGGCATCGGCCTCGCTG CATTATTGAGTTCATTTCTCAATGCCTTCAATTGCTGAACTTAGATGAATCAATGAGAAATTTACTGGAGTCCAAAATTTCTTGTTTCCATGAAGGAATT GGTGTATGTGAACAACTCATGGGCATCCCCATTCCACTCTCATACACTCGCCTAACATCAAGATTTCTGGTCCTCTGGCATTTGACTCTTCCTATTATAC TTTGGGATGATTGCCACTGGATTGTAGTCCCTTCCACTTTTATCAGTGCTGCTTCCTTGTTCTGCATAGAAGAAGTTGGTGTTCTTATTGAGGAGCCATT TCCAATGTTAGCCCTTGATGAGCTATGCAATGTAGTTCAGAGCAACATTTGGGAAGCAATTGCAACTGAAAAGGAGATTCAAGCTCGCCTTGTTGCAAAA AGAAAGAGCCATTCCTGTGAGCACTCAACAAACGGTTGGCCAACTCCTAAGCAGATGGAATAG
AA sequence Show only first row Show all	>Potri.014G082900.1 pacid=42763557 polypeptide=Potri.014G082900.1.p locus=Potri.014G082900 ID=Potri.014G082900.1.v4.1 annot-version=v4.1 MSQPSNPLKPPLTNISLSSRFTPKTPLKLPLTTFPSKPLKASTPAFKTLSFNSQTPPKKPSKAITITSLLRAIPDWADRVKERGMRKKRSLYNHEKWVEH RSSFRHVRHLLSSLSSRVVLSLVPPVIAFTSVAVVVASYNSAVEMHFLPGFFPVLRTSSLPYQLTAPALALLLVFRTEASYSRFEDGKTAWTKVISGTND FARQVISGVDGSSNSALKSELLRYIMAFPIALKCHVTYGSNIGQDLQNLLEAGDLAIVLKSRHRPRCIIEFISQCLQLLNLDESMRNLLESKISCFHEGI GVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPSTFISAASLFCIEEVGVLIEEPFPMLALDELCNVVQSNIWEAIATEKEIQARLVAK RKSHSCEHSTNGWPTPKQME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61320			Bestrophin-like protein (.1)		Potri.014G082900 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	2.00	0.9763
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Potri.003G051400 [exp]	2.44	0.9763
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.016G068700 [exp]	7.00	0.9437
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	7.48	0.9607
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.006G075200 [exp]	7.93	0.9571
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	8.30	0.9741
AT1G73885			unknown protein		Potri.015G053800 [exp]	10.19	0.9707
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	10.39	0.9641
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	10.48	0.9682
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	10.58	0.9651	Pt-AGT.2

Compare expression of checked genes

Potri.014G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.