Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKIP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61350 298 / 1e-99 SKIP4 SKP1 interacting partner 4 (.1) AT1G55270 113 / 5e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 105 / 2e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 100 / 8e-24 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G63220 97 / 2e-22 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G21950 88 / 3e-19 SKIP6 SKP1 interacting partner 6 (.1) AT3G43710 86 / 2e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33900 82 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39590 81 / 9e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 80 / 1e-16 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217700 [exp] 119 / 7e-30 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 117 / 3e-29 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 112 / 7e-28 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G193800 [exp] 112 / 9e-28 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 109 / 6e-27 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 102 / 2e-24 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.007G081100 [exp] 101 / 6e-24 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.002G091900 [exp] 87 / 1e-18 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 84 / 5e-18 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017821 [exp] 354 / 2e-120 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10001071 [exp] 122 / 4e-31 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 115 / 1e-28 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 114 / 3e-28 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 114 / 3e-28 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 88 / 3e-19 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 85 / 5e-18 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 83 / 3e-17 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 82 / 4e-17 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 78 / 8e-16 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.014G083200.1 pacid=42762857 polypeptide=Potri.014G083200.1.p locus=Potri.014G083200 ID=Potri.014G083200.1.v4.1 annot-version=v4.1 ATGGAAGAGAATCAAATGTCGCTGATATGTGGGCTTCCAGATGACATAGCTCTTTCTTGCTTGGCGAGAGTGCCCCGGAAGTACCATGCGGTATTAAAGT GTGTTTCCAAGAGATGGAGAGAATTCGTGTGCAGTGATGAGCTCTATGATTATCGTAGAATGCATAGTTTAAGTGAGACTTGGATATATGCTTTATGTTG TGACAAGTATGGGAAGATATGGTTTTATGTAGTGGACCCTAATGAATCACAGAGGCGTTGGAAGTGTGTTCCAGGTCTTCCAGCTCGTGCTTTGAATAAA ATGGGTATGGGATTTGAAGTTTTAGGAAAAAAGGTTTACTTGTTGGGTGGTGGTGGTTGGTTGGAAGCTACTAATGAAGCCTTCTGCTATGATGTTTCAA GGAATTCATGGACTCAAGTTGCTTCCTTGTCGACTGCTAGGTACGATTCTGCTTGTCAAGTTTATGATGGGAAAATATATGCCATTGGTGGGTTAGCATC AACAAGCAATGATCCATATTCTTGGGACATTTTTTATCCCCGTACAAATAGCTGGGAATTTCATTCCAATGACTGCGCTGTTCCTGAAGTTGAAGATTGC GTAGTCTTGGATGGGAAGATTTATATCCGCTGCCAAGCTTCTGCTTCTACCATGTCTTCTCCTTTCTATGCAGTCGTTTACGAACCTTCAAGTGGCATGT GGCAGCGTGCAGATGCTGATATGGTGTCAGGCTGGCAAGGTCCAGCGATTGTTGTGGACGGCACACTTTATGTGTTGGATCAGAGTTCAGGGACCAAGCT GATGATGTGGCAGAAGGATAAAAGGGAATGGGTGGTAGTTAAGAGGCTGTCAACACTGCTTACAAAACCACCTTGCCAACTGGCAGCGATTGGGAAGAAG TTATTTATCGTAGGAAGGGGACTCAGCACGGTTGTGTTGGATACCAGCCAAACTGGAAGTGTGGAGGGAGCTATGGTTGGTACATCCATACCTGGACTAA TCACTGCTGATAAAGTGCTCAATTGTAAATGTCAAACACTTTGA
AA sequence Show only first row Show all	>Potri.014G083200.1 pacid=42762857 polypeptide=Potri.014G083200.1.p locus=Potri.014G083200 ID=Potri.014G083200.1.v4.1 annot-version=v4.1 MEENQMSLICGLPDDIALSCLARVPRKYHAVLKCVSKRWREFVCSDELYDYRRMHSLSETWIYALCCDKYGKIWFYVVDPNESQRRWKCVPGLPARALNK MGMGFEVLGKKVYLLGGGGWLEATNEAFCYDVSRNSWTQVASLSTARYDSACQVYDGKIYAIGGLASTSNDPYSWDIFYPRTNSWEFHSNDCAVPEVEDC VVLDGKIYIRCQASASTMSSPFYAVVYEPSSGMWQRADADMVSGWQGPAIVVDGTLYVLDQSSGTKLMMWQKDKREWVVVKRLSTLLTKPPCQLAAIGKK LFIVGRGLSTVVLDTSQTGSVEGAMVGTSIPGLITADKVLNCKCQTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Potri.014G083200 [exp]	0	1	Pt-SKIP4.1
					Potri.008G026250 [exp]	13.49	0.6174
AT3G26100			Regulator of chromosome conden...		Potri.012G018600 [exp]	24.00	0.6044
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.004G005500 [exp]	47.43	0.5278
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078600 [exp]	55.31	0.4965	ALDH6.4
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	59.12	0.5355
AT1G01770			unknown protein		Potri.002G157400 [exp]	107.47	0.5016
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.016G089300 [exp]	129.56	0.4871
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Potri.007G018600 [exp]	141.30	0.4914
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Potri.010G004100 [exp]	147.95	0.4727	Pt-BSH.1
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.001G197400 [exp]	177.24	0.4468	UBP6.2

Compare expression of checked genes

Potri.014G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.