Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45880 862 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G00490 715 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G45300 589 / 0 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G32290 439 / 6e-147 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 432 / 2e-145 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G17090 427 / 1e-142 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 399 / 2e-131 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 294 / 2e-91 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 234 / 1e-68 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT1G19350 58 / 1e-08 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159300 [exp] 1075 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083800 [exp] 753 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G106500 [exp] 611 / 0 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 424 / 1e-140 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 421 / 5e-140 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 407 / 1e-134 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 402 / 2e-132 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 395 / 1e-129 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 303 / 2e-94 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018842 [exp] 895 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10037846 [exp] 655 / 0 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10030392 [exp] 633 / 0 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10035679 [exp] 598 / 0 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10017820 [exp] 588 / 0 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10039701 [exp] 429 / 6e-142 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 419 / 6e-139 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 415 / 4e-138 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10001087 [exp] 407 / 1e-134 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 400 / 4e-132 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14 CL0058 [poplar] [flax] PF05687 [poplar] [flax] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G083700.6 pacid=42763533 polypeptide=Potri.014G083700.6.p locus=Potri.014G083700 ID=Potri.014G083700.6.v4.1 annot-version=v4.1 ATGGGCATGGACGTTAAAGAGGAAGATGATGACAATAGAGGGAAGCTTATTGCTGCACAAATGATGGTAGGAATGGACGGAGGGATGACATCAAATAGTA GTAATAATCAGTTTCAACATCACCAGCAATTTCAAGAACATGTTAGCTCTCCAGGGGGAGGAACTCGAATGTCAAGGCCGCTAGAAGAAAAGGAGAGGAC AAAGCTAAGAGAGCGGCATCGGAGGGCAATCACAGCGAGGATCTTGGCAGGATTAAGGAGGCATGGTAATTACAATCTTAGGGTTAGAGCTGATATAAAT GATGTAATTGCTGCTTTGGCGAGGGAAGCTGGCTGGGTTGTTCTTCCAGATGGAACCACCTTTCCTTCAAGATCTCAGGGCTCAAGGCCTGCAGGTGGCA CTTCTGCTGCCGTAACATCATCATCTTCACATCTGGTGTCACAACCGACTCCACCTGGTTCCCTCGGAGGAGTCTCTCCTGGTCATCGGACCTCGGTTGA GTACAATTCATGCCGTATGAAAGGTGCTTTTATACCCAACCCCTCACCTTATGATCTATCTGCAAGCACTCAGTCACAAACCCCAGGAATGGTGGGAGAA GGAAGAGAACAAACAGAGAGTGATCCTCGTGTTGGTGGCTCCATGGACACTATAAATGACAAGCAGATTGTTGACATACCTCCAATTCCAAAGCTACCAG AGCAGGATTTTGCTGGCAGTCCATTCATACCGGTTTATGTGATGCTACCATTGGGTGCCATAAATATGAAGTGTGAGCTGGTTGATCCAGATGGCCTATT GAAGCAGCTCAAGGTATTGAAATCTGCCAATGTTGATGGTGTTATGGTTTACTGCTGGTGGGGCATAGTAGAGGCTCACGCTCCTCAAGAGTACAACTGG AATGGTTACAAGAGGCTCTTCCAGATGGTGCATGAACTCAAGCTCAAGTTACAGGTTGTGATGTCATTTCATGAATGTGGAGGCAATGTTGGTGATGATG TTTGTATTCCCCTGCCAAATTGGGTGGCAGAAATTGGACGCAGTAATCCTGACATTTTCTTCACCGATAGAGAAGGAAGGCACAACCCGGAATGTCTTTC ATGGGGAATCGACAAAGAACGAGTGTTAAGAGGTCGTACTGCTATTGAGGTGTACTTTGACTACATGAGAAGCTTCCGAGCAGAATTTGATGAATTCTTT GTGGATGGTATCATCTCCATGGTTGAAGTTGGACTCGGTCCTTGTGGGGAGCTACGGTACCCTTCTTGTCCTGTGAAGCATGGCTGGAGATATCCTGGCA TTGGTGAATTTCAGTGTTATGATAAATATTTTCTGAAAAGCTTAAAGAAGACAGCGGAAGTAAGGGGACATCCATTCCGGGCTAGGGGACCAGATAATGC TGGCTCCTATAATTCCCAGCCACATGAAACTGGTTTCTTCTGTGATGGAGGGGAATATGATGGGTATTATGGCAGGTTCTTCCTTAATTGGTATGCTAGG ATTTTAGTTGATCATGGTGATCGGGTACTTTCTTTGGCAAAGTTAGCTTTTGAAGGCACTCGAATTGCTGTGAAGCTATTAGGTATTCATTGGTGGTACA AGACATCCAGTCATGCTGCTGAATTAACTGCTGGGTTCTACAACCCATGCAATCATGATGGCTATGCTGCAATTGTTGCAATGCTAAAGAAGCACGGGGC TGTTTTAAACTTCTCGTGTTCTGAATTGTGGACAGTAGACCAGCAAGTGGACTTTGCAGAGGCACATGCAGATCCTGAGGGATTAGTATGGCAAGTGCTG AATGCTGCATGGGATGTTGGCACACCAGTTGCTGGCGAGAACGCTCTTCCATGCTATGACAGGGTCACGTATAACAAGATTCTGGATAACGCCAAGCCAT TGAGTGATCCGGATGGAAGACATTTTTTGTCTTTTACTTACCTTAGGCTCAGTCCACTTCTAATGGAGAGACAAGCCTACATGGAATTTGAACGCTTTGT TAAGAGAATGCATGGGGATGCCGTTCTTGATCTCCAGGTATAG
AA sequence Show only first row Show all	>Potri.014G083700.6 pacid=42763533 polypeptide=Potri.014G083700.6.p locus=Potri.014G083700 ID=Potri.014G083700.6.v4.1 annot-version=v4.1 MGMDVKEEDDDNRGKLIAAQMMVGMDGGMTSNSSNNQFQHHQQFQEHVSSPGGGTRMSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADIN DVIAALAREAGWVVLPDGTTFPSRSQGSRPAGGTSAAVTSSSSHLVSQPTPPGSLGGVSPGHRTSVEYNSCRMKGAFIPNPSPYDLSASTQSQTPGMVGE GREQTESDPRVGGSMDTINDKQIVDIPPIPKLPEQDFAGSPFIPVYVMLPLGAINMKCELVDPDGLLKQLKVLKSANVDGVMVYCWWGIVEAHAPQEYNW NGYKRLFQMVHELKLKLQVVMSFHECGGNVGDDVCIPLPNWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAIEVYFDYMRSFRAEFDEFF VDGIISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDKYFLKSLKKTAEVRGHPFRARGPDNAGSYNSQPHETGFFCDGGEYDGYYGRFFLNWYAR ILVDHGDRVLSLAKLAFEGTRIAVKLLGIHWWYKTSSHAAELTAGFYNPCNHDGYAAIVAMLKKHGAVLNFSCSELWTVDQQVDFAEAHADPEGLVWQVL NAAWDVGTPVAGENALPCYDRVTYNKILDNAKPLSDPDGRHFLSFTYLRLSPLLMERQAYMEFERFVKRMHGDAVLDLQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	0	1
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.013G020500 [exp]	2.00	0.8994
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	2.82	0.8990
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	5.74	0.8855
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	6.00	0.8846
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	7.21	0.8712
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	7.74	0.8647
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	10.58	0.8607	BRD911
					Potri.009G040500 [exp]	10.90	0.8786
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	11.00	0.8739
					Potri.002G220667 [exp]	12.36	0.8753

Compare expression of checked genes

Potri.014G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.