Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00490 799 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G45880 689 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 560 / 0 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT4G15210 473 / 5e-163 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 462 / 5e-158 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G17090 447 / 2e-152 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 429 / 5e-145 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 330 / 1e-106 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 246 / 2e-74 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083700 [exp] 754 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 749 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 568 / 0 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 454 / 2e-154 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 448 / 1e-152 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 435 / 2e-147 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 433 / 2e-146 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 428 / 2e-144 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 333 / 2e-107 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037846 [exp] 786 / 0 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10030392 [exp] 752 / 0 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10018842 [exp] 685 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10035679 [exp] 555 / 0 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10017820 [exp] 546 / 0 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10039701 [exp] 453 / 2e-153 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 448 / 3e-152 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 444 / 1e-151 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 433 / 8e-147 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 429 / 6e-145 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.014G083800.1 pacid=42764261 polypeptide=Potri.014G083800.1.p locus=Potri.014G083800 ID=Potri.014G083800.1.v4.1 annot-version=v4.1 ATGGCCTTTAATGCGTGTGTGGCTTTGTCATTAACAAATAGTCAATTATTTTTAGTTTCTTCTATGCGAGTGTGTAGTGGATTTCGGAGCTCAGTGGCGT GCAATTTGCGGTGTCGTCGTTTGAAAGGCGATGCAGTGTCAATTGGTTCTCGGTTTAGAAATTTCGGGGTGGCGAGAGCTAAAGGGCAGAAAATTGAAGA TCATTCTCTTCTTGATGATTCAATGGATAATACTGATGATGAGCAGGTTGGAGATGTGCGTCCGAAGGTGCCGGAGCGGGATTTTACTGGCACTGCTTAT GTTCCTGTTTATGTGATGCTGCCGCTAAGTGTCATTGACATGAATTGTGAGTTGGTTGATCCTGAAGATCTACTGAACCAGCTGAGGATCTTGAAATCAG CAAATGTTGATGGTGTTATGATTGATTGTTGGTGGGGGATAGTGGAGGCTCATGCTCCGCAGGTGTATAACTGGAGTGGTTACAGGAGGCTCTTTCAGAT GGTGCGTGATCTTAAGCTTAAGTTGCAGGTTGTTATGTCATTTCATGAATGCGGAGGCAATGTTGGTGATGATGTCCATATTCCACTTCCACAATGGGTG ACAGAAATTGGTGAAACCAATCCTGACATATATTTCACAGACAGAGAAGAAAGGCGCAATACTGAATGCCTCACTTGGGGAATTGATAAGGAGCGAGTTT TAAAACGTCGGACAGCTGTTGAGGTTTACTTTGATTATATGAGGAGCTTTAGGGTGGAGTTTGATGAGTTCTTTCAGGATGGAATCATCTCTGAGATTGA AATTGGACTAGGTCCATGTGGGGAGCTACGGTATCCCTCATATCCTGCAAAACATGGCTGGACATATCCTGGCATTGGTGAATTCCAGTGCTATGATAAG TACCTGATGAAGAGTCTGAGCAAAGCAGCAGAGGTGAGGGGGCACTCATTTTGGGGAAGAGGTCCAGAGAATGCAGGTTCTTACAACTCTGCACCGCATG AGATTGGGTTTTTCCGTGATGGAGGAGACTATGATAGTTACTATGGAAGATTCTTCCTCAATTGGTACTCTCAAGTTTTGATTGATCACGGAGATCGTGT TCTTGCTCTGGCTAATTTAGCCTTTGAAGGCACTGGCATTTCTGCAAAGCTATCAGGAATTCATTGGTGGTACAAAACAGCTAGTCATGCTGCTGAATTG ACTGCTGGATTCTACAACTCTTCAAATCGTGATGGCTATGCTCCAATTGCAGCAATGTTGAGGAAACATGGGGTAGCTCTCAATTTCACATGTTTTGAAA TGCGCACAGTGGACCAGTTTGAGGGCTTTCCAGAGGCACTCGCAGATCCTGAGGGATTAGTTTGGCAGGTGCTGAATGCCGCATGGGATGCTTGTATCCC ACTTGCCAGTGAGAATGCTCTTCCTTGCTACGACAGAGAAGGTTATAACAAGATATTAGAAAATGCCAAGCCTCTGCATAATCCGGATGGGAGACATTTA TCTGTCTTTACCTATCTCAGGCTTAGCCCTGTTCTCATGGAGAGACACAACTTTCAAGAGTTCGAACGATTTGTGAAGAGAATGCATGGAGAAGCAGATT CAGATTCAAATGCAATTTGA
AA sequence Show only first row Show all	>Potri.014G083800.1 pacid=42764261 polypeptide=Potri.014G083800.1.p locus=Potri.014G083800 ID=Potri.014G083800.1.v4.1 annot-version=v4.1 MAFNACVALSLTNSQLFLVSSMRVCSGFRSSVACNLRCRRLKGDAVSIGSRFRNFGVARAKGQKIEDHSLLDDSMDNTDDEQVGDVRPKVPERDFTGTAY VPVYVMLPLSVIDMNCELVDPEDLLNQLRILKSANVDGVMIDCWWGIVEAHAPQVYNWSGYRRLFQMVRDLKLKLQVVMSFHECGGNVGDDVHIPLPQWV TEIGETNPDIYFTDREERRNTECLTWGIDKERVLKRRTAVEVYFDYMRSFRVEFDEFFQDGIISEIEIGLGPCGELRYPSYPAKHGWTYPGIGEFQCYDK YLMKSLSKAAEVRGHSFWGRGPENAGSYNSAPHEIGFFRDGGDYDSYYGRFFLNWYSQVLIDHGDRVLALANLAFEGTGISAKLSGIHWWYKTASHAAEL TAGFYNSSNRDGYAPIAAMLRKHGVALNFTCFEMRTVDQFEGFPEALADPEGLVWQVLNAAWDACIPLASENALPCYDREGYNKILENAKPLHNPDGRHL SVFTYLRLSPVLMERHNFQEFERFVKRMHGEADSDSNAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Potri.014G083800 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	2.00	0.8164	AGO913
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	4.58	0.7480
AT5G19670			Exostosin family protein (.1)		Potri.018G085400 [exp]	6.00	0.7842
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	8.94	0.7353
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	9.79	0.6956
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	11.66	0.7023
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	12.04	0.6715
AT4G15080			DHHC-type zinc finger family p...		Potri.006G020800 [exp]	12.12	0.6784
					Potri.002G100700 [exp]	15.87	0.6811
AT5G45540			Protein of unknown function (D...		Potri.015G113600 [exp]	17.94	0.7069

Compare expression of checked genes

Potri.014G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.