Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00460 673 / 0 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 660 / 0 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 540 / 0 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT5G02010 457 / 3e-157 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 447 / 1e-152 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G38430 422 / 1e-143 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT3G55660 409 / 4e-138 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT1G79860 378 / 1e-126 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G24620 372 / 2e-124 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 363 / 7e-121 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159700 [exp] 890 / 0 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.008G062000 [exp] 477 / 8e-164 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 471 / 1e-161 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 468 / 2e-160 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 459 / 9e-156 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.004G179742 [exp] 428 / 1e-145 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 422 / 6e-143 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 397 / 9e-134 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 386 / 2e-129 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014779 [exp] 618 / 0 AT1G01700 554 / 0.0 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10040248 [exp] 476 / 7e-164 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 468 / 9e-161 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 461 / 2e-158 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 446 / 1e-152 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10036352 [exp] 439 / 1e-152 AT1G01700 387 / 2e-132 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10021500 [exp] 444 / 5e-150 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 444 / 6e-150 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10036351 [exp] 403 / 4e-139 AT4G00460 360 / 3e-124 RHO guanyl-nucleotide exchange factor 3 (.1.2) Lus10023983 [exp] 398 / 3e-133 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.014G084200.3 pacid=42763288 polypeptide=Potri.014G084200.3.p locus=Potri.014G084200 ID=Potri.014G084200.3.v4.1 annot-version=v4.1 ATGGATAATTCGTCGAGTTTTGACGAAGTTTCGGATCCCGGTTATCAACCTTCACCTTCTTCCTTGGATCAAAATGATCACCCAGCCGTGGAAACTCCAG TGTACTCAACAATGAGTGGTGATTCATTCATGTTCGGCAGGACTTATTCAGAGACCTCAGCCTTTTCTGATCCCATAGATGATAACAGCTATTCAAGTGA ACCTTCTCCTTCTCATTGGCCAGTAACCAAATCTGGAGCACAACATCAGGCTATGCTTAGAAGACTAGAAATGAAGCAACAGAAGCAAGTTGCGGATGAC AAGTTGGATGATCAAGAATCTGTTGACTTGGAACTTGAGATGATGAAAGAAAGATTTTCAAAGCTTTTGCTTGGTGAAGACATGTCAGGAAGTGGCAAAG GTGTCTGCACAGCTGTTACTATATCAAACGCCATAACAAATCTCTATGCAACTGTGTTTGGGCAAAATTTGAGATTAGAGCCATTGAAACCTGAGAAGAA ATCGATGTGGAAGAGAGAAATGGATTGTCTTCTTTCTGTATGTGATTACATAGTAGAATTTATCCCCAAGTCTCAGAATTTACAAGACGGAACAGTTCTT GAGGTGATGGAAAGTAGACCAAGATTAGATATTCATATCAACCTTCCGGCATTAAGAAAGCTTGACGCAATGCTCATGGAAGTACTGGATAGTTTCCAAG ATACAGAGTTTTGGTATGCAGAACAAGGAAGCATGTCATCAAATTCAACTCTTTCAGGCTCGTTTCGGAGAGTTATTGTCCAGCGTAAAGAAGAGAAATG GTGGGTGCCAGTCCCATGTGTTCCCTCTGGTGGCCTCTCTGAGAAGTCGAGGAAGCACTTGCGACACAAACGTGACTGTGCATATCAAATTCACAAAGCT TCCATGGCCATTAACAGTAGCATTCTTGCTGAGATGGAAATTCCAGAGACATACATAGCATCTCTTCCCAAGAGCGGAAGAGCGAGCCTGGGGGACACAA TTTACCGCTACCTGTATACAGCGGACAAATTCTCCCCAGGACATCTTCTTGACTGTCTCAACTTAGCATCAGAACATGAAGCACTTCAGCTTGCAGACCG AGTTGAAGCTTCAATGTACACATGGAGACGCAAAGCATGCCTAAGCCATTCAAAATCCTCTTGGAACATGGTGAAAGATCTCATGTCTGACATTGATCGA ACAGATAAAAATCATATTCTAGCAGAAAGGGCCGAGACCTTGCTATTTTGCCTGAAGCAGAGATACCCCGAACTTTCACAGACATCCTTGGACACTTGCA AAATCCAGTACAATCAGGATGTGGGACAAGCAATTCTAGAGAGCTACTCAAGAGTTTTAGAAGGCTTAGCATTCAACATTGTTGCTTGGATCGAAGATGT TCTTTTCGTAGATAGGAACCAAGAACAATAG
AA sequence Show only first row Show all	>Potri.014G084200.3 pacid=42763288 polypeptide=Potri.014G084200.3.p locus=Potri.014G084200 ID=Potri.014G084200.3.v4.1 annot-version=v4.1 MDNSSSFDEVSDPGYQPSPSSLDQNDHPAVETPVYSTMSGDSFMFGRTYSETSAFSDPIDDNSYSSEPSPSHWPVTKSGAQHQAMLRRLEMKQQKQVADD KLDDQESVDLELEMMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLSVCDYIVEFIPKSQNLQDGTVL EVMESRPRLDIHINLPALRKLDAMLMEVLDSFQDTEFWYAEQGSMSSNSTLSGSFRRVIVQRKEEKWWVPVPCVPSGGLSEKSRKHLRHKRDCAYQIHKA SMAINSSILAEMEIPETYIASLPKSGRASLGDTIYRYLYTADKFSPGHLLDCLNLASEHEALQLADRVEASMYTWRRKACLSHSKSSWNMVKDLMSDIDR TDKNHILAERAETLLFCLKQRYPELSQTSLDTCKIQYNQDVGQAILESYSRVLEGLAFNIVAWIEDVLFVDRNQEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.014G084200 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Potri.003G117800 [exp]	1.41	0.9445
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	2.00	0.9344
AT3G53320			unknown protein		Potri.006G131650 [exp]	3.00	0.9245
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	5.65	0.9220
AT4G01730			DHHC-type zinc finger family p...		Potri.002G186800 [exp]	8.06	0.9008
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	9.48	0.9039
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.001G415800 [exp]	17.02	0.9178
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	20.49	0.9038	Pt-SOM1.1,CHR905
AT5G02370			ATP binding microtubule motor ...		Potri.006G085300 [exp]	21.49	0.9000
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	23.66	0.8777

Compare expression of checked genes

Potri.014G084200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.