Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00440 396 / 2e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G45900 266 / 4e-77 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 234 / 1e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G01695 124 / 4e-30 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G07620 81 / 2e-15 ATOBGM GTP-binding protein Obg/CgtA (.1) AT5G02390 75 / 2e-13 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G63670 71 / 3e-12 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G20240 54 / 6e-07 Protein of unknown function (DUF3741) (.1) AT3G53540 50 / 1e-05 unknown protein AT5G43880 48 / 3e-05 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160000 [exp] 1428 / 0 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G103400 [exp] 247 / 4e-69 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.016G095500 [exp] 98 / 1e-20 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 95 / 1e-19 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 95 / 1e-19 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 59 / 1e-08 AT3G53540 433 / 1e-136 unknown protein Potri.002G253600 [exp] 59 / 1e-08 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G080200 [exp] 56 / 1e-07 AT3G53540 234 / 1e-64 unknown protein Potri.014G194600 [exp] 49 / 2e-05 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042850 [exp] 747 / 0 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 447 / 1e-147 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10014776 [exp] 448 / 2e-144 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 438 / 4e-140 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10028148 [exp] 214 / 4e-62 AT4G00440 89 / 3e-19 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 160 / 7e-40 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017797 [exp] 155 / 5e-39 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10002008 [exp] 98 / 1e-20 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10016715 [exp] 92 / 1e-18 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10035490 [exp] 92 / 1e-18 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.014G084600.1 pacid=42762664 polypeptide=Potri.014G084600.1.p locus=Potri.014G084600 ID=Potri.014G084600.1.v4.1 annot-version=v4.1 ATGGCAAAAAAATCACAGAGACGCCCTGTGCGATATGAAAGAGACCAATCGGGCTGCATGTGGGGTTTAATGAGTATGTTTGACTTCCGCCATGGTCGAT CAACGCAGAAGCTGATTTCAGATAGGAGGCGTGGGACCAGACATGCTGTTGTTACTGGAACTCCTAAGAAAAAGCCTGACAATCTTAGTGAAAACTGCCA AGGCATAATTGATGGTGAAGAGAGCAGAAAAGCAACAAGTGATACCAATAAGCTGAGTGTGAAAAAGCTCATGGAAGAAGAGATGTTCAGTGAGCTAGAC ACAAAGAATGAAATAAACAATCCTGAGGTAGAACCAAAACAGTCAAATTCAGAAAATGGAAACCACAGAACGAAGAACCACAAGAGAAAAAAAAGTCGCA CAAAAAGTTGTGATATACACTTGGAGGATCTTAATGTTGCTGAAAGCTTGGAATCTGAACAGCATTGCCTTCATAATTTAGAGAAGCAATCTACGAAAAG TCTTGATATAGGTGAAATAATGGAGGATTTCTGCCATCAGATCCATCAGAAAAGCATAGATTATGTGGAGCATGACCAACATGATGAAGTTCAACATCAG CCAAACCAAAAGAATCCTGACTTCGAAGAGAAATTGAGTGAGGTAATAAAACTCATAAATGAGAAACTTATTGACAGGAAACATGTCACTGAAGATGGGG ACCTCCACCCATCCAAAGAACTGAGGGATGCACTTCAGATTCTAACTTCTGATGAGGAATTGTTTCTAAAACTCTTACAAGGTCCAAAGTCCATAATGGT GAAGCATGTTCAAAACTTGTGGAATGCTCAGGTTGAGAAAGATGGCGACTCCAAGTTACTTGCCGTATCTAACTTGTTAGAACAGGGGCTTCATGGCTTC AGACATTCTGGCGAGGCTATCCATGGTAAACAACGCAAATTTTTCAGAAAAAAGACCAAATCTCTGGAAAAGAACCCATCAAAGGAAAATAAGGCATCTC AAGCTTCAAATAGAATTGTAATATTAAAGCCTGGCCCGACAAGCTTGCTACTACCTGAAAATGAAAGCAGTATTGGATCATCACCAGAATCTCAATTCAT CATCAGAAACAAGGGACCAATTGAGAGATCTGCTTCTCACTTTTCTCTGACTGAAATTAAAAGAAAGTTGAAAAATGCAATGGGAAAGGAAAAGCAGGAA ACCTCTACTGATGGGACTTCAAAGAGATTTTTTAACAAACATGCTGTGGGAAATAGTGAAAAAGGATTCAAGGAGAACCTTGGAAGGAATTCTCCAAGTA AAGACCACTTCTTTATTGAAAAAATTGCTAGACCTCCCATGGGTGGCAAAATGAGAGAGAAGACTTGCAAGTTGAAAGAATCTGAAATAAGTGTGGAAGA TGAAGCTGTTATTTATCCCAAGCAAAGGCCATCTAACATCTACATCGAGGCCAAGAAACATCTCTCTGAGATGCTGAGCACTGGCCAGGGGGATGTGGAT TTTTCAAGCGGGCCTGTGCCAAAAACCCTTGGCAGGATTCTCTCCCTTCCCGAGTACAATTTTTCGCCGCTTGGTAGTCCAGGAAGGGATTGGGAGCAAG GCTTTCTGACAGCACAGATGAGATTTTCTGCCAGTGAAAAATTTCAGAAACATGAAACCATTGTCAGCCATTTAGGTCGAACAGCATTAAACTCAGAGCC TCTGTCATCTGTTTCCAATGACAGCATCTGGGATAAAAAACAAGCTTCTTCAAACCCAAATGCAAGTGCCTCAAATGAACTTCATGATAAAGAAGAGAAA ACCTTTTGCTCTATCAGAGATGAGATGCCTTCTGAAGGTGAAGTGGAGGTTGTAAAAAAAACTGCAATTGAAGAAGAGAGCAATATCTTAGATACTCTTT CTGAACCAAGCAGCTCGCCTCTTGATGAACACCAAAATGGTGATATGTCTGACGTTTGTGATAAAAAAGAATATTCAGAATGCTTGGAACATGAATCATT TGAAGAAAACCAACCTCTATCTTCTCCATTAACATCTCCATCCACCACTTCAAACACCAAAAAACTTAGTTGTCTAGAGGTTACATCTGAGATACGAGAA CGGCCCAGTCCTATATCTGTTCTTGAGCCACTTTTCCCAGAGGAGGAGATCACCCCAGCAAGCAGCAGACTTGAACCTGTTGAACTGCCAGTGCAACCCT TGAGAATTCAATTTGAAGAACATGAACCTTCAGCTGCAGATCGAAACATCCCTCTGAAAGCTTCTGTAGATGACAAGGAATCGGTATTTGAGTATGTAAA AGCAGTGCTTCAAGCATCTGGCATGAAGTGGGATGAATTTTATATGAGGTCACATTCTTCAGAACAGCTTCTTGACCCATCAATATTTTTTGAGGTAGAA TTCTTTTCCAACCAGCTTTGTTGTGACAAGAAGCTTCTCTTTGATTCTGCTAACGAAGCTCTTGTGGAGGTATATGAGCGGTATTTTGGTTGCTTCCCTG GGTTATCATTTGTAAAATCTACCATCCGGCCTGCCCCAGACATGAAAAATAGCATTTATGAGGTTTGGGAAGGAGTCTCTTGGCATCTCCTCCCATTGCC AATGCCTCATACTTTGGATCAGCTTGTTAAGAAAGATATGGCAAAAACTGGAACATGGATGGACCTTCGATGTGATATTGAAACTATCCTTGTTGAAATT GGTGAGGCCATTTTTGAAGATTTGATGGAAGAAGCCATTTTCGGAGATCTGATGGAATAA
AA sequence Show only first row Show all	>Potri.014G084600.1 pacid=42762664 polypeptide=Potri.014G084600.1.p locus=Potri.014G084600 ID=Potri.014G084600.1.v4.1 annot-version=v4.1 MAKKSQRRPVRYERDQSGCMWGLMSMFDFRHGRSTQKLISDRRRGTRHAVVTGTPKKKPDNLSENCQGIIDGEESRKATSDTNKLSVKKLMEEEMFSELD TKNEINNPEVEPKQSNSENGNHRTKNHKRKKSRTKSCDIHLEDLNVAESLESEQHCLHNLEKQSTKSLDIGEIMEDFCHQIHQKSIDYVEHDQHDEVQHQ PNQKNPDFEEKLSEVIKLINEKLIDRKHVTEDGDLHPSKELRDALQILTSDEELFLKLLQGPKSIMVKHVQNLWNAQVEKDGDSKLLAVSNLLEQGLHGF RHSGEAIHGKQRKFFRKKTKSLEKNPSKENKASQASNRIVILKPGPTSLLLPENESSIGSSPESQFIIRNKGPIERSASHFSLTEIKRKLKNAMGKEKQE TSTDGTSKRFFNKHAVGNSEKGFKENLGRNSPSKDHFFIEKIARPPMGGKMREKTCKLKESEISVEDEAVIYPKQRPSNIYIEAKKHLSEMLSTGQGDVD FSSGPVPKTLGRILSLPEYNFSPLGSPGRDWEQGFLTAQMRFSASEKFQKHETIVSHLGRTALNSEPLSSVSNDSIWDKKQASSNPNASASNELHDKEEK TFCSIRDEMPSEGEVEVVKKTAIEEESNILDTLSEPSSSPLDEHQNGDMSDVCDKKEYSECLEHESFEENQPLSSPLTSPSTTSNTKKLSCLEVTSEIRE RPSPISVLEPLFPEEEITPASSRLEPVELPVQPLRIQFEEHEPSAADRNIPLKASVDDKESVFEYVKAVLQASGMKWDEFYMRSHSSEQLLDPSIFFEVE FFSNQLCCDKKLLFDSANEALVEVYERYFGCFPGLSFVKSTIRPAPDMKNSIYEVWEGVSWHLLPLPMPHTLDQLVKKDMAKTGTWMDLRCDIETILVEI GEAIFEDLMEEAIFGDLME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00440			Protein of unknown function (D...		Potri.014G084600 [exp]	0	1
AT4G00440			Protein of unknown function (D...		Potri.002G160000 [exp]	6.48	0.8631
AT2G25800			Protein of unknown function (D...		Potri.018G044200 [exp]	8.94	0.8401
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	13.89	0.8687
AT2G40370		LAC5	laccase 5 (.1)		Potri.008G073700 [exp]	21.16	0.8271	GLAC90.1
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	25.69	0.8529	SYP131.2
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	30.72	0.8511
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	37.54	0.8290
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G118700 [exp]	38.01	0.8494
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Potri.018G025000 [exp]	39.00	0.8304
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	39.79	0.8394

Compare expression of checked genes

Potri.014G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.