Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 857 / 0 U-box domain-containing protein kinase family protein (.1) AT3G49060 406 / 2e-128 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 337 / 4e-102 U-box domain-containing protein kinase family protein (.1) AT5G61560 333 / 4e-101 U-box domain-containing protein kinase family protein (.1.2) AT5G57035 333 / 4e-101 U-box domain-containing protein kinase family protein (.1) AT2G19410 332 / 1e-100 U-box domain-containing protein kinase family protein (.1) AT5G51270 331 / 3e-100 U-box domain-containing protein kinase family protein (.1) AT5G61550 326 / 5e-98 U-box domain-containing protein kinase family protein (.1.2) AT1G17540 300 / 2e-89 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 298 / 4e-89 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 1360 / 0 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 570 / 0 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 505 / 2e-166 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.001G239100 [exp] 380 / 2e-119 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 376 / 1e-116 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 332 / 3e-100 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 311 / 2e-93 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 308 / 4e-92 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 285 / 7e-84 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036362 [exp] 1009 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 1006 / 0 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 627 / 0 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 516 / 8e-172 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 446 / 7e-144 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 413 / 2e-131 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10039245 [exp] 407 / 2e-128 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 398 / 5e-125 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 389 / 7e-122 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10020185 [exp] 289 / 3e-87 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.014G084900.8 pacid=42762597 polypeptide=Potri.014G084900.8.p locus=Potri.014G084900 ID=Potri.014G084900.8.v4.1 annot-version=v4.1 ATGGCTATGGTGGGTCATGTGCCTGTTGCGAAAACGCAACAAGCGAGTCCATTGAGGTTGGTTGAATTTAGAATGCCAGGAAAGATGGCAAGTGGTAGAG AGGTTGTGGAAGAAACGGTAGCAAGAGTGATTGAAGTGATTGAAGAGAAGATCTTTGTTGCTGTAGGAAAATCTGTGAAAGAATGTAAATCGATGTTATT TTGGGCTTTACAGAAATCAGGAGGCAAAAGAATTTGTATTATTCATGTTCACCAACCGGCGCAAATGATTCCTTTCATGGGTACCAAATTTCCGGCCAGT AAGCTGAAAGAACAGGAAGTGAGGGCATACTGGGAAATTGAAAGGCAAGAGATGCTTAAGATGTTAGGCGAGTACCTTTTTCTCTGTCGAAAAATGGGGG TGCGGGCTGAGAAACTATATGTTGAAATGGAGTCTATTGAGAAGGGAATTTTAGAACTCATTTCTCAGCATGGGATCAGGAAGCTTGTTATGGGAGCAGC AGCAGACAAGCGCTATTCCAAGAATATGATGGACATCAAGTCTAAGAAGGCCGTCTCTGTTTGCCTTCAAGCACCTGCTTCTTGTCACATATGGTTTATT TGCAAGGGGCACCTTATCCAAACACGGAAAGGTGCTCTGGATGGAACTGATACAGATGTTAGACCTTCATCACAGCAAAAAAGTCCAAATACTGAAGCTG GACAATCAAATATTATGAGATCACAGTCTATTTTGTTTGGACAGCACCATCATGTAAAACTCACCAATCCAGCTCAAGATTTATTCCGAAAGGTAAGATC TCTGAATGTTAATGGACCTGGGGGGAGATTAACAACTCCGACTTCACCAGATGGAGGGCCTTCAACTCCATCGAGGTCAGATGCAGACGGGAGTTCTGAT CAATATGATGCGTTATCAAGGAGTACTTCCCAAAATTCAGTTCTCTCATCACGTTCTTCCAGTGGAATGGCCAATGTTGCTTTGATTCCACTTTTAGGAA TTGAAGGGAGTGAGATTGGGTCAGAGTTAAGCACAGTGCCTCATCAGAAGGTGGATCTTTTCCAGTCATCTCCTCCCAGTGTACTGGTACTTGATGGAAG TATAGAGGATCCTCTGTATGATCAACTTGAACAAGCAATGGCTGAGGCCGAAAATTCAAGGTTTGAAGCATCTGAAGAGGCGGTCAGGTGTGCAAAAGAA GAAAGGGATGTTGTTGAGGCCATACGCAAGGCCAAAGCATCAGAAAGCTTGTATACAGAGGAGTCAAAACGAAGAACAGTAGTTGAGGAAGAATTAGCAA AAGAAAAGGAAGAACTTGAAAAGATAAATAAAGAACTTGAAAAGATAAATAAAGAACAGGATGAAGTCATGGGAGAACTTTGCATTGCCCAGGATCACAA ATCACTGCTGGAGAAGCAAATTGAAGAGTCTGATGAGATGGTAAAGGAGTTGGAGCAGAAAATCATCTCTGCTGTGGGACTTTTGCAAAATTACAAGAAA GAACGGGATCATTTGCATAAGGGCCGTGACTATGCACTGAAAGAAGCCGAGGAGCTGAGGAGAAATCAAACAGAGGCCTCAAGCACGCACATGCCTCGGT TCTTCTCTGACTTCTCTTTCTCAGAAATTGAGGAGGCAACTCACCACTTTGATCCATCCCGTAAGATTGGGGAAGGGGGGTATGGTAACATTTATAAAGG CGTCTTGCGCCAAACCCAGGTGGCTGTCAAGATGCTGGACTCTAATAGCATGCAAGGTCCTGCTGAATTTCAACAGGAGGTTAATGTTTTGAGCAAGATG AGACATCCAAATCTTATCACTCTTGTTGGAGCATGTCCAGAAGCGTGGACTCTTATTTACGAGTATCTTCCCAATGGAAGCCTCGAAGACCGACTGAGCT GCAAGGACAACTCTCCGCCTTTGTCTTGGCAAACTAGAATACGCATCGCCACTGAATTATGCTCTGTCCTCATCTTTCTTCACTCTAGTAAACCACACAG CATAGTGCACGGGGACCTTAAGCCTGCTAACATCCTCCTTGATGAAAATTTTGTCACTAAACTAAGTGACTTTGGAATCTGTCGTTTACTGGATCACAAG GAAGGTTCTAGCAACAACACAACAATATGCAGAACTGATCCCAAAGGAACTTTTGTGTATATGGATCCTGAATTTGTTTCCACTGGAGAGCTTTCTCCAA AGTCAGATGTTTATTCATTTGGAATTATTTTGTTGAGATTGTTGACTGCAAGGCAGGCCTTGGGTATAACAAAGGAGGTGCGGTATGCATTAGATAAAGG AACCTTGAAAACCCTCTTGGATCCTTTGGCGGGAGATTGGCCGTTTGTGCAAGCTGAAATGTTGGCTCACATGGCACTAAGGTGTTGTGAGATGAACCGA AAGAACCGGCCAGATCTTGCATCAGAGGTATGGAGGGTACTCGAGCCAATGAAGGCTTCATGTGGAACGTCATCTTTTTCCCAGCTTGGTTCGGAAGAGC ATTTCCAACCTCCTTCATATTTTACATGCCCCATTTTCCAAGAAGTAATGCGAGATCCACATGTAGCAGCCGATGGTTTTACTTATGAAGCAGAGGCCTT GAAAGGATGGCTAGACAGCGGACATGATACTTCACCCATGACCAACTTTAAGCTGGCACACTGTGATCTTATCCCTAACCGTGCACTTCGCTCGGCAATT CAGGGGCAGCTGTAG
AA sequence Show only first row Show all	>Potri.014G084900.8 pacid=42762597 polypeptide=Potri.014G084900.8.p locus=Potri.014G084900 ID=Potri.014G084900.8.v4.1 annot-version=v4.1 MAMVGHVPVAKTQQASPLRLVEFRMPGKMASGREVVEETVARVIEVIEEKIFVAVGKSVKECKSMLFWALQKSGGKRICIIHVHQPAQMIPFMGTKFPAS KLKEQEVRAYWEIERQEMLKMLGEYLFLCRKMGVRAEKLYVEMESIEKGILELISQHGIRKLVMGAAADKRYSKNMMDIKSKKAVSVCLQAPASCHIWFI CKGHLIQTRKGALDGTDTDVRPSSQQKSPNTEAGQSNIMRSQSILFGQHHHVKLTNPAQDLFRKVRSLNVNGPGGRLTTPTSPDGGPSTPSRSDADGSSD QYDALSRSTSQNSVLSSRSSSGMANVALIPLLGIEGSEIGSELSTVPHQKVDLFQSSPPSVLVLDGSIEDPLYDQLEQAMAEAENSRFEASEEAVRCAKE ERDVVEAIRKAKASESLYTEESKRRTVVEEELAKEKEELEKINKELEKINKEQDEVMGELCIAQDHKSLLEKQIEESDEMVKELEQKIISAVGLLQNYKK ERDHLHKGRDYALKEAEELRRNQTEASSTHMPRFFSDFSFSEIEEATHHFDPSRKIGEGGYGNIYKGVLRQTQVAVKMLDSNSMQGPAEFQQEVNVLSKM RHPNLITLVGACPEAWTLIYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSSKPHSIVHGDLKPANILLDENFVTKLSDFGICRLLDHK EGSSNNTTICRTDPKGTFVYMDPEFVSTGELSPKSDVYSFGIILLRLLTARQALGITKEVRYALDKGTLKTLLDPLAGDWPFVQAEMLAHMALRCCEMNR KNRPDLASEVWRVLEPMKASCGTSSFSQLGSEEHFQPPSYFTCPIFQEVMRDPHVAADGFTYEAEALKGWLDSGHDTSPMTNFKLAHCDLIPNRALRSAI QGQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	0	1
AT3G61670			Protein of unknown function (D...		Potri.003G137700 [exp]	1.00	0.9406
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	1.73	0.9167
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	3.16	0.9278
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	3.46	0.9007
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.004G197100 [exp]	4.47	0.9116
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	5.65	0.8954
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	6.48	0.8850
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	6.70	0.9055	Pt-RGA.54
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	10.58	0.8839
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	14.07	0.8938

Compare expression of checked genes

Potri.014G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.