Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01650 811 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 767 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 436 / 4e-148 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 414 / 2e-139 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 99 / 4e-22 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 96 / 1e-21 ATSPP signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160500 [exp] 985 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.003G128500 [exp] 797 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 784 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G232200 [exp] 447 / 1e-152 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 426 / 2e-144 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 99 / 3e-22 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 96 / 3e-21 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 92 / 3e-20 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 91 / 6e-20 AT2G03120 542 / 0.0 signal peptide peptidase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017796 [exp] 822 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10031104 [exp] 771 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 690 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 681 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 650 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10036364 [exp] 630 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 620 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 439 / 4e-149 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 320 / 8e-105 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 187 / 7e-55 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0130 [poplar] [flax] Peptidase_AD PF04258 [poplar] [flax] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Potri.014G085300.1 pacid=42764112 polypeptide=Potri.014G085300.1.p locus=Potri.014G085300 ID=Potri.014G085300.1.v4.1 annot-version=v4.1 ATGAATATTTGTAAAAATAAGTATGTATTTATAGTTGTTTTAGCTTCAAGCTTTTGTTTTGGATCAGCTAGTGATATAGTGCACCAGGACGACGTCGCTC CAAAGCGGCCTGGCTGTGAAAATAATTTCGTTCTGGTCAAAGTACCAACTTATATTAATGACGTAGAAGACATTGAGTATGTTGGTGTTGGTGCTCGTTT TGGCCTCACTTTGGAATCTAAGGAAAAACATGCGAATTTATCTACACTTGCTCTGGCTGACCCTCCTGATTGTTGCAGCAAACCCAGAAATAAGCTTTCA GGGGAGGTGATCTTGGCTTACCGAGGTAACTGTAGCTTCACAGCGAAGGCAAATGTTGCTGAAGATGCTGGTGCTTCAGCTATTCTTATCATAAACAACC GGACAGAACTCTTCAAGATGGTTTGTGAAGTCAATGAAACTGATGTAAAGATTGGCATTGCTGCTGTCATGCTCCCACAAGATGCTGGTGCAAGCTTGGA AAAATATTTGACGAGCAGCTCCACAGTTAAAGTGCAGTTATACTCTCCACGACGTCCAGTGGTAGATGTTGCAGAAGTGTTCTTATGGCTCATGGCTGTT GGCACCATTTTATGTGCTTCCTACTGGTCCGCGTGGAGTGCTAGAGAAGCTGCTATAGAGCAGGATAAGCTATTAAAGGATGGTTCGGATGAATTTATAG ATATGGATGGTGTTCGCTCTAGTGGTATTGTTAACATCAACACAGCATCTGCAGTTCTCTTTGTCGTGATTGCTTCATGTTTCTTGATTATGCTTTACAA GCTTATGTCATACTGGTTTATTGAGGTTCTGGTGGTTCTGTTCTGCATTGGGGGAGTGGAGGGCTTGCAAACTTGCTTGGTTGCTTTATTATCATGTTTC AGATGGTTTCAACCTGCTGGAGAATCATTTATTAAAGTTCCCTTCTTTGGAGCTGTCTCATATCTGACTTTGGCAGTCTCTCCTTTCTGCATAGCATTTG CTGTTGTTTGGGCAGTTTTCCGCCGTGTCTCCTTTGCTTGGATTGGTCAAGATATCCTTGGTATTGTTCTGATCATTACTGTTCTTCAGATTGTTCGTGT GCCCAATCTCAAGGTGGGAACAGTTCTTCTAAGTTGTGCCTTTTTGTATGACATCTTCTGGGTTTTTGTTTCCAAATGGTGGTTCAAGGAGAGTGTGATG ATAGTGGTAGCTCGTGGTGATAAGAGTGGAGAGGATGGTATACCAATGCTACTGAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTATAGCATAATTG GGTTTGGTGACATCATCTTACCAGGATTGCTTGTAGCTTTTTCATTGAGATATGATTGGCTTGCAAAGAAGAATCTTCGAGCCGGATACTTCTTGTGGGC AATGACTGCTTATGGTTTAGGTCTCCTAATAACATACTTGGCTTTGAACATGATGGATGGGCATGGCCAGCCAGCTTTGCTTTACATTGTTCCATTCACC CTTGGTACGTTTCTGACGCTGGGAAGGCGACGAGGTGATCTCAAAACATTATGGACAATGGGAGAACCTGAAAGGCACTGCCCGCACATCCAATTTCAAC CCCCTGGCTCTCAACAATAA
AA sequence Show only first row Show all	>Potri.014G085300.1 pacid=42764112 polypeptide=Potri.014G085300.1.p locus=Potri.014G085300 ID=Potri.014G085300.1.v4.1 annot-version=v4.1 MNICKNKYVFIVVLASSFCFGSASDIVHQDDVAPKRPGCENNFVLVKVPTYINDVEDIEYVGVGARFGLTLESKEKHANLSTLALADPPDCCSKPRNKLS GEVILAYRGNCSFTAKANVAEDAGASAILIINNRTELFKMVCEVNETDVKIGIAAVMLPQDAGASLEKYLTSSSTVKVQLYSPRRPVVDVAEVFLWLMAV GTILCASYWSAWSAREAAIEQDKLLKDGSDEFIDMDGVRSSGIVNINTASAVLFVVIASCFLIMLYKLMSYWFIEVLVVLFCIGGVEGLQTCLVALLSCF RWFQPAGESFIKVPFFGAVSYLTLAVSPFCIAFAVVWAVFRRVSFAWIGQDILGIVLIITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFKESVM IVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRAGYFLWAMTAYGLGLLITYLALNMMDGHGQPALLYIVPFT LGTFLTLGRRRGDLKTLWTMGEPERHCPHIQFQPPGSQQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G085300 [exp]	0	1
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	4.35	0.7992	Pt-CBL1.1
AT4G12010			Disease resistance protein (TI...		Potri.017G105201 [exp]	9.16	0.7870
					Potri.010G176250 [exp]	14.49	0.7741
AT2G46080			unknown protein		Potri.002G162600 [exp]	15.87	0.7626
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	23.23	0.7944	Pt-RSH2.3
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150000 [exp]	31.78	0.7890
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	33.94	0.7635
AT1G11360			Adenine nucleotide alpha hydro...		Potri.019G119400 [exp]	37.30	0.7779
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	39.33	0.7668
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.008G174100 [exp]	40.42	0.7456

Compare expression of checked genes

Potri.014G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.