Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00400 757 / 0 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 734 / 0 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT2G38110 571 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT3G11430 386 / 1e-129 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 364 / 4e-121 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 349 / 4e-114 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 282 / 4e-89 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 281 / 7e-89 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT3G11325 238 / 7e-74 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097800 [exp] 585 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 577 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 476 / 5e-165 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 469 / 2e-162 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 370 / 2e-123 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 369 / 3e-123 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 367 / 1e-121 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 326 / 1e-105 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002500 [exp] 531 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 481 / 8e-167 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 476 / 9e-165 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004833 [exp] 405 / 4e-138 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10017794 [exp] 362 / 4e-121 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 358 / 2e-119 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10004711 [exp] 357 / 2e-118 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010934 [exp] 353 / 6e-116 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 349 / 4e-115 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 342 / 1e-111 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G085500.1 pacid=42762529 polypeptide=Potri.014G085500.1.p locus=Potri.014G085500 ID=Potri.014G085500.1.v4.1 annot-version=v4.1 ATGTCGCCAACGAAACCCGCAAAAAAATTTCCGCCGATAACGGCCTGTAACGGCACGACGCACCAATCTATAGCAGCGGATCTTGATGGCACACTCCTTG TGTCGAGTAGCTCGTTTCCATACTTTATGATTGTTGCTGTTGAAGCTGGAAGCCTCTTTCGTGGTCTTGTTTTACTTCTTTCACTGCCTATCGTCATCGT GTCTTACCTCTTCATATCTGAAGCCTTGGGGATACAAATGTTAATCTTCATTTCTATGTCTGGGCTCAAGATCCGTGATATTGAACTTGTTTCACGCGCT GTATTGCCTAGGTTTTATGCTGCAGATGTTAGATCGGAGAGTTTTGAGGTGTTTGATAGGTGCAAGAGAAAGGTGGTGGTGACAGCAAATCCAACTATAA TGGTTGAGCCTTTTGTGAAGGATTTTCTCGGTGGAGATAAGGTTTTGGGCACGGAGATTGAAGTGAACCCGAAGACCAAGAGGGCTACAGGATTTGTTAA GAAGCCTGGTGTTCTGGTGGGCAAGTGGAAAGAATTGGCTGTTTTAAAGGAGTTTGGAGAGGAAGCACCGGATCTTGGTATTGGTGACCGCAAGACTGAT CATGATTTCATGTCCCTTTGCAAGGAGGGCTACATGGTGCATCGCAGCAAATCAGCGACTCCACTACCGCGGGATCGCCTCAAAAATCGTATCATCTTCC ATGATGGCCGTCTTGTTCAACGTCCAGACCCACTCAATGCCTTGATCACTTACATTTGGTTGCCGTTTGGATTCATCCTCTCCATCATTCGCGTCTACTT CAACCTCCCACTCCCAGAACGCATCGTACGGTACACATACGAAATGCTTGGCATTCACCTGGTCATTCGTGGGACCCCACCTCCTGCCCCATCACCTGGG ACCCCAGGAAATCTCTATGTTTGCAATCACCGTACAGCCCTGGATCCAATTGTCATAGCCATAGCACTTGGACGCAAAGTCTCGTGTGTTACGTACAGCG TAAGCCGTCTCTCGAGGTTTCTTTCACCAATCCCAGCCATCGCTTTGACTCGTGATCGCGCGGCTGATGCTGCAAGAATATCATCCATACTTCAAAAGGG TGATCTAGTGGTGTGTCCGGAGGGAACCACTTGTCGTGAGGAGTTCTTGCTGCGATTTAGTGCATTGTTTGCAGAGTTGAGTGATAGGATTGTGCCCGTG GCAGTCAATTGTAAACAAAACATGTTTTATGGCACGACCGTGCGTGGTGTCAAGTTCTGGGATCCTTATTTTTTCTTCATGAACCCGAGGCCAACTTACG AAGTGACATTCCTTGATCGCTTGCCAGAGGAAATGACGGTCAAGGCTGGTGGCAAATCTTCGATCGAGGTGGCAAACTATGTGCAGAAAGTGTTGGGTGA AGTGTTAGGATTCGAGAACACTGGGTTGACCAGGAAGGACAAGTACCTGTTGCTTGGTGGGAATGATGGTAAGGTCGAGTCAATGCACAATGCCAAAAAA TAA
AA sequence Show only first row Show all	>Potri.014G085500.1 pacid=42762529 polypeptide=Potri.014G085500.1.p locus=Potri.014G085500 ID=Potri.014G085500.1.v4.1 annot-version=v4.1 MSPTKPAKKFPPITACNGTTHQSIAADLDGTLLVSSSSFPYFMIVAVEAGSLFRGLVLLLSLPIVIVSYLFISEALGIQMLIFISMSGLKIRDIELVSRA VLPRFYAADVRSESFEVFDRCKRKVVVTANPTIMVEPFVKDFLGGDKVLGTEIEVNPKTKRATGFVKKPGVLVGKWKELAVLKEFGEEAPDLGIGDRKTD HDFMSLCKEGYMVHRSKSATPLPRDRLKNRIIFHDGRLVQRPDPLNALITYIWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGIHLVIRGTPPPAPSPG TPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSRLSRFLSPIPAIALTRDRAADAARISSILQKGDLVVCPEGTTCREEFLLRFSALFAELSDRIVPV AVNCKQNMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLDRLPEEMTVKAGGKSSIEVANYVQKVLGEVLGFENTGLTRKDKYLLLGGNDGKVESMHNAKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	0	1
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	1.41	0.9501	Pt-LACS2.2
AT4G29110			unknown protein		Potri.018G086500 [exp]	2.64	0.9111
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	2.64	0.9501
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015100 [exp]	4.00	0.9110
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	6.32	0.9236
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	9.48	0.9110
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	9.79	0.9159
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G141200 [exp]	12.48	0.8874
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.001G323100 [exp]	14.07	0.8899	FBL3,Pt-IPS1.2
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	14.28	0.9019

Compare expression of checked genes

Potri.014G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.