Plant FIBer expression Database

Potri.014G085900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29910 635 / 0 EMB2798, ORC5, ATORC5 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G135975
[exp]
536 / 0 AT4G29910 299 / 8e-99 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1)
Potri.002G160650
[exp]
0 / 1 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014768
[exp]
689 / 0 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Lus10036368
[exp]
233 / 1e-69 AT4G29910 219 / 2e-64 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13191 AAA_16 AAA ATPase domain
CL0023 PF14630 ORC5_C Origin recognition complex (ORC) subunit 5 C-terminus
Representative CDS sequence
>Potri.014G085900.2 pacid=42762896 polypeptide=Potri.014G085900.2.p locus=Potri.014G085900 ID=Potri.014G085900.2.v4.1 annot-version=v4.1
ATGGGTAAAGAGGAAAGTCCACAAATCACCAGAAGAGTGACACGATTGTCTTCTTCAACTGCCGTCACAAGCAATGAGGTTGAAACAGAAAAAATAACCA
AACCTTATAAGCCCACACTCAATGACTTTGTATTTGGAGGGGAACAACTTAGCTTCAACGATTTGCTTTCTAGTTTTCCTGCTAGAGGCAATCAAATTCG
TGAGCTTTTGCGTCTTTTGGGTCCGGTGAATTCCCCTATGCTTCCATTATTTGTTTATGGAGATCCTTCTACTGGGAAAACTAGTACCATTCTTCAAATT
TTTAGGTACCTCAATCGCCCTTTTGTGTATGCTAGCTGTCGTACTTGTTATAGTCTGCAGATCTTGTTTGAATCGGTTTTAAATCAGTTGTTGCTTCATA
AGAAGAATTCGGCTAATGGCTATTCGAGTACAAAACGCTGTATTAAGCCATCTGATTTTGTCAACTTTGTTCGTGAAGACTTGACAAGTGTTATTGAAAA
GCTCAGGAGTTTGAAGAAATTGGGTTCAAATAAGTCGGCTGGAAAGCCTAACGGGAATATGCTCTACTTGATATTTGATAACTTGGAGCTTATTCGTGAG
TGGGATAAAAGTTCGAGTGCATTACCCTTTATGTTTAATCTTTATGATGTTTTGAAGATGCATGAGGTGGGACTCATATTTATCAGTAATACTTCGCCGG
ATACATACTACTCAAACATGGGATATACAGAGCATGTTCCTGTTTATTTTCCTGAATACACAGAAGACGATCTTCGTCAAATTTTGATGAGAAACCAAGC
TAATCGAAAGTTATATTCCTCCTTTCTTGATGTTGTCCTGAGACCTTTCTGTAGAACTACTAGACGAGTAGATGAATTATCAACTGCTTTTTCACCATTA
TTTAGAAAGTATTGTGAACCGTTGAGTGATTTGGCATCTGTACCCAATGAAGAGATGAAGAGAAGGTTGTTTAGTCATTTTCAGCCACATATTGCCCCTT
CCTTAAATGAGATATTCTGGGTTCCATCTAAGTCTTCTACTGAAGCTGAAATCAACAAGGATACGAGGCAGAAAGGCAGCACTAGAAAGTCAGAAGTTAG
TGACCATTTTGCTCAGATAGATTTCCACATGTCCACTTCTGCGAAATATCTTCTCATTTCAGCATTCCTTGCTTCAAGAAACCCAGCTACTCTCGATGCA
TCCTTGTTTGATTCAACTGGGGGATCTGATAGTCGCAAAAGAAAAAGGAAGGCCTCTGAAAAATCAATGGAACAGAAGGAAGTTGCTGAACAAGAATTAC
TTATGAAAGGGCCCGGAACTTTCCCACTGGAGAGGTTATTAGCTATATTTCAGTGTATAACCTCTGCAGCAGATTCACTTGATGAAGAGGAACATGAAAA
TGATGTCTTAAGAGTTGGAGGGGATTGTGGACTCATGTCTGATGTTCTATTGCAACTTTCGAGCCTTTGTAATGCCAACTTTATTATTAAAGGAGGAAGC
TGCCCTTTAGAGGGTTCAACTCGGTATAGATCTACAGTTTCTGAAGATTTGGCCTTGAAGGTAGCAAGGAGCCTGAAGTTCCCTCTGCCAAATTACTTGT
ACAGACGATAA
AA sequence
>Potri.014G085900.2 pacid=42762896 polypeptide=Potri.014G085900.2.p locus=Potri.014G085900 ID=Potri.014G085900.2.v4.1 annot-version=v4.1
MGKEESPQITRRVTRLSSSTAVTSNEVETEKITKPYKPTLNDFVFGGEQLSFNDLLSSFPARGNQIRELLRLLGPVNSPMLPLFVYGDPSTGKTSTILQI
FRYLNRPFVYASCRTCYSLQILFESVLNQLLLHKKNSANGYSSTKRCIKPSDFVNFVREDLTSVIEKLRSLKKLGSNKSAGKPNGNMLYLIFDNLELIRE
WDKSSSALPFMFNLYDVLKMHEVGLIFISNTSPDTYYSNMGYTEHVPVYFPEYTEDDLRQILMRNQANRKLYSSFLDVVLRPFCRTTRRVDELSTAFSPL
FRKYCEPLSDLASVPNEEMKRRLFSHFQPHIAPSLNEIFWVPSKSSTEAEINKDTRQKGSTRKSEVSDHFAQIDFHMSTSAKYLLISAFLASRNPATLDA
SLFDSTGGSDSRKRKRKASEKSMEQKEVAEQELLMKGPGTFPLERLLAIFQCITSAADSLDEEEHENDVLRVGGDCGLMSDVLLQLSSLCNANFIIKGGS
CPLEGSTRYRSTVSEDLALKVARSLKFPLPNYLYRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29910 EMB2798, ORC5, ... EMBRYO DEFECTIVE 2798, origin ... Potri.014G085900
[exp]
0 1
AT3G56870 unknown protein Potri.014G181200
[exp]
1.41 0.9214
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.002G121500
[exp]
2.00 0.9196 CYCA3.1
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Potri.004G172600
[exp]
3.46 0.8471 Pt-GRP2.3
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Potri.012G060000
[exp]
3.46 0.9033 Pt-MSH2.1
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.018G112800
[exp]
3.74 0.8745
AT1G67320 EMB2813 EMBRYO DEFECTIVE 2813, DNA pri... Potri.003G169300
[exp]
4.89 0.8672
AT5G59970 Histone superfamily protein (.... Potri.007G013500
[exp]
5.47 0.8755 HFO909
AT5G02440 unknown protein Potri.001G238900
[exp]
5.74 0.8538
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Potri.001G358100
[exp]
5.91 0.8813 Pt-ATBRCA1.1
AT3G14740 RING/FYVE/PHD zinc finger supe... Potri.011G103100
[exp]
6.00 0.8995

Potri.014G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.