Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00355 200 / 5e-63 ATI2 ATG8-interacting protein 2, unknown protein AT2G45980 193 / 2e-60 ATI1 ATG8-interacting protein 1, unknown protein AT4G10080 47 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160700 [exp] 450 / 4e-161 AT4G00355 217 / 8e-70 ATG8-interacting protein 2, unknown protein Potri.019G071300 [exp] 46 / 2e-05 AT4G10080 125 / 3e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036368 [exp] 285 / 1e-92 AT4G29910 219 / 2e-64 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1) Lus10014767 [exp] 183 / 1e-56 AT2G45980 107 / 4e-28 ATG8-interacting protein 1, unknown protein Lus10002932 [exp] 45 / 3e-05 AT4G13530 176 / 7e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G086000.2 pacid=42762879 polypeptide=Potri.014G086000.2.p locus=Potri.014G086000 ID=Potri.014G086000.2.v4.1 annot-version=v4.1 ATGGAAGGTAAAAATGAAGGAGAGGAGAATCCCCCTCGTGGGAATGATTGGGAGGTTGTTTCTCTGACAGCATCTACATATGCAGCTGCTCCTGGTCCAA AAGAATTTGATCAGAAGGATGATGATAACAGCAAGGTTTATGAAGAAGATGAGGCTGAAAGTTCTCACGCTTTATTCATGTCTCGTCACTTTGTGTTTCC ACCGAGTCAACATGAGAATTTGCCATTAGAGCATGTCAACAGTGAGATTCTTGATTCACATGTGGGGAAGAATGTGGCCCTTGAACTTGGTCCAGAAGAA GGAGGTAGATCCAGTGGTAAGAATGAAGAGATTTGGCCATTCAAGGGGTTGGAAGAATCTGAAGAGTACCCTGGGATACAGTTGTTTGATGAAAAGGGCA AAAAGGGTCAAGAATTTGAAGAGAGCACAACTCTGCAAGATTTCAGTGACAAGGAACAAAGTATATACAGTACAGCTGCACTTACTTCTTTCCACAATGA AACGGAACTCAGTGGATCAACCACATATGGTGAGAACCTGGGAATTCCCGAAGTAAATGAATCTTCTGAAAGGGGATTGGATTTTCCTGCTGTTGTTCCT TTCTCACCGAAAGCTGCCAAAGATGCTGACCTTCCTTCTAATGCCTGGTGGAAGAGGAGGGCAGCTTCCTTGTATGCTCATGCAAAAGAGGCGAATACAT TTTGGTCTATTTTCGTTACAGCAGCTGTGATGGGAATCGTAATCCTTGGGCAGCGCTGGCAGCAAGAAAGGTGGCAGGCTTTGCAACTTAAGTGGCAGGC TAGCATCAACAATGAGAGAAGTGGGAGTGTACTGAGGCCAATAACTCGACTTAAAGATGTGATTGTCGGTGGCAATCGACGTGGTTCTTTTATCAGGGGA AGTTCCTCAAGTGACAACTAA
AA sequence Show only first row Show all	>Potri.014G086000.2 pacid=42762879 polypeptide=Potri.014G086000.2.p locus=Potri.014G086000 ID=Potri.014G086000.2.v4.1 annot-version=v4.1 MEGKNEGEENPPRGNDWEVVSLTASTYAAAPGPKEFDQKDDDNSKVYEEDEAESSHALFMSRHFVFPPSQHENLPLEHVNSEILDSHVGKNVALELGPEE GGRSSGKNEEIWPFKGLEESEEYPGIQLFDEKGKKGQEFEESTTLQDFSDKEQSIYSTAALTSFHNETELSGSTTYGENLGIPEVNESSERGLDFPAVVP FSPKAAKDADLPSNAWWKRRAASLYAHAKEANTFWSIFVTAAVMGIVILGQRWQQERWQALQLKWQASINNERSGSVLRPITRLKDVIVGGNRRGSFIRG SSSSDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	1.00	0.8416
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	2.44	0.7407
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.005G217500 [exp]	4.47	0.6963
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	5.91	0.7229
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	6.00	0.7378
AT1G27000			Protein of unknown function (D...		Potri.010G092700 [exp]	6.70	0.7266
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	6.92	0.6929
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.001G469800 [exp]	8.48	0.7749
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.001G073900 [exp]	12.00	0.6323
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	13.41	0.6725

Compare expression of checked genes

Potri.014G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.