Plant FIBer expression Database

Potri.014G086100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45990 437 / 6e-157 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036369
[exp]
451 / 8e-162 AT2G45990 434 / 3e-155 unknown protein
Lus10014766
[exp]
317 / 3e-110 AT2G45990 306 / 3e-107 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G086100.1 pacid=42764530 polypeptide=Potri.014G086100.1.p locus=Potri.014G086100 ID=Potri.014G086100.1.v4.1 annot-version=v4.1
ATGGGAGATCTATATGCCTTGGATTTCGACGGAGTTCTCTGTGATAGCTGCGGTGAAAGCTCTCTCTCCGCTGTCAAGGCTGCTAAAGTGAGATGGCCTG
TTTTATTCGATACGGTGGATTCAACTTTGCAGGACTGGATTGTTGATCAGATGCACATTGTGCGACCTGTGGTGGAAACTGGATATGAAAATCTGTTGCT
TGTAAGGCTGCTGCTGGAGATGAGAATCCCTTCTATTCGGAAATCCTCGGTTGCAGAGGGACTCACGGTTGATGGGATATTGGATAACTGGTCAAAGATA
AAGCCTGTCATTATGGAAGAATGGGCTGAGAATAGAGATGCTCTGATAGAACTCTTTGGAAAGGTCAGGGATGAATGGATGGATAATGACTTGGCAACAT
GGATTGGAGCGAACAGATTCTATCCCGGTGTTCCTGATGCTTTGAAATTTGCAAGCTCAAGTATATATATAGTCACCACAAAACAGAGCCGGTTTGCAGA
TGCTTTACTACAAGAGCTCGCGGGACTGAAAATCCCGCCAGAAAGAATATATGGTCTCGGAACTGGTCCCAAGGTGGAAGTGCTGAAGCAACTTCAAAGG
AAACCGGAGCACCAGGGGTTGAAACTACACTTTGTGGAAGATCGACTTGCAACCCTGAAGAATGTAATTAAAGATCCTGAATTAGATGGGTGGAACTTGT
ACTTAGGGGATTGGGGATACAACACTCATCAAGAGAGAGGGGAAGCAGCAAGCATTCCCAGGATTACCCTTCTTCAGCTCACCGACTTCAGTAAAAAGCT
CAAGTAA
AA sequence
>Potri.014G086100.1 pacid=42764530 polypeptide=Potri.014G086100.1.p locus=Potri.014G086100 ID=Potri.014G086100.1.v4.1 annot-version=v4.1
MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPVLFDTVDSTLQDWIVDQMHIVRPVVETGYENLLLVRLLLEMRIPSIRKSSVAEGLTVDGILDNWSKI
KPVIMEEWAENRDALIELFGKVRDEWMDNDLATWIGANRFYPGVPDALKFASSSIYIVTTKQSRFADALLQELAGLKIPPERIYGLGTGPKVEVLKQLQR
KPEHQGLKLHFVEDRLATLKNVIKDPELDGWNLYLGDWGYNTHQERGEAASIPRITLLQLTDFSKKLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45990 unknown protein Potri.014G086100
[exp]
0 1
AT1G50480 THFS 10-formyltetrahydrofolate synt... Potri.001G010800
[exp]
1.73 0.9321 FTHFS1,Pt-THFS.2
AT4G12060 Double Clp-N motif protein (.1... Potri.001G115500
[exp]
3.74 0.9176
AT4G03260 Outer arm dynein light chain 1... Potri.019G119300
[exp]
6.16 0.9096
AT2G35840 Sucrose-6F-phosphate phosphohy... Potri.016G066100
[exp]
9.00 0.9146 Pt-SPP1.2
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.001G253300
[exp]
10.00 0.9353 Pt-AGT.2
AT2G05620 PGR5 proton gradient regulation 5 (... Potri.008G171000
[exp]
12.32 0.9259 PGR5.2
AT5G09830 BolA-like family protein (.1) Potri.001G309200
[exp]
13.03 0.9259
AT2G17390 AKR2B ankyrin repeat-containing 2B (... Potri.004G210000
[exp]
15.16 0.9153 Pt-AKR2.1
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Potri.010G193300
[exp]
15.42 0.9321
AT1G78510 SPS1 solanesyl diphosphate synthase... Potri.001G380500
[exp]
15.68 0.9250

Potri.014G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.