Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46020 2484 / 0 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G19310 476 / 5e-143 Homeotic gene regulator (.1) AT3G06010 471 / 7e-141 ATCHR12 Homeotic gene regulator (.1) AT2G28290 486 / 1e-138 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06400 353 / 2e-101 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 350 / 3e-100 CHR17 chromatin remodeling factor17 (.1.2) AT2G13370 338 / 2e-93 CHR5 chromatin remodeling 5 (.1) AT5G66750 305 / 1e-87 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G25170 297 / 2e-81 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 285 / 3e-78 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160900 [exp] 3612 / 0 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.010G019150 [exp] 498 / 3e-142 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 489 / 2e-139 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G149900 [exp] 463 / 5e-138 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 461 / 3e-137 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.010G021400 [exp] 362 / 2e-104 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 350 / 2e-100 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.001G253400 [exp] 338 / 1e-93 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 335 / 1e-92 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036371 [exp] 2793 / 0 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10014764 [exp] 1293 / 0 AT2G46020 1226 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10034064 [exp] 465 / 4e-139 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 460 / 2e-137 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10012798 [exp] 458 / 1e-129 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033967 [exp] 347 / 2e-96 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10009711 [exp] 339 / 3e-94 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 338 / 2e-93 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10041735 [exp] 314 / 2e-90 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10024019 [exp] 296 / 4e-84 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.014G086500.1 pacid=42762998 polypeptide=Potri.014G086500.1.p locus=Potri.014G086500 ID=Potri.014G086500.1.v4.1 annot-version=v4.1 ATGCAATCTGGTGGTGGTGGAGGAGGGGGGCCCAGTTGGGTAGGACCGGCTGGGCGTGCGGGGTCCACATCATCGGCTGCAGCATCGCCTTCGTCTTCGT CTTCGTCTGCTGCTGTATGGAACCTTCAGTTGGGATTTGATTCGGTACAGCAGCAGCAGCAGCAACAGCAGTCTAGGCAGGCATTACAGCAACAATTACT TAGAAAACCCGAAGGGAATGAAACCCTTCTAGCTTATCAAGCTGGAACTCTTCAAGGAGTTACGGGAGGGAACAATTTTGCTTCATCTCCAGGCTCAATG CAAATACCTCAACAGTCCAGGCAATTATTTGATTTGGCTCGACAACATGGTTCCTCTCAGGACGGACAGAATAGGAATCAAGGTGTTGAGCAACAGGCTT TGAACCCAATTCAACAAGCATATCTTCAATATGCTTTCCAGGCCGCCCAACAAAAGTCAGCTTTGGCAATGCAGTCTCAGCAACAAGCTAAAGTAGGAAC ACTGGGCTCTCCTGCTGGAAAGGATCATGACATGCGGGTGGGAAATTTGAAAATGCAGGAACTCATGTCCATGCAGTCGGCAAATCAGGCTCAGGCTTCA TCTTCTAAGAACCCATCTGAACATTTTTCTCGTGGTGAAAAACAGGTGGAACAAGGTCAGCAGCAAGCCTCTGAACAGAGGAATGAGCAAAAGTCTCCAA TCCAGCCTACTGCCATTGGACAACTAATGCCTGCAAATGTTACTAGACCCATGCAGGCACCACAGGTTCAGCAAAACATCCAAAACATGGCAAACAACCA GCTCACAATGGCTGCTCAGATGCAAGCAATGCAAGCATGGGCACTTGAGCGCAACATTGATCTGGCACAACCTGCAAATGCCAACTTGATGGCGAAGCTT ATTCCAGTCATGCAGGCAAGGATGGCTGCACAACTAAAGGCAAATGAAAATAATACTAGTGGACAATCATCACATCTCCCTGTGTCAAAGCCACAGGTTG CTTCTCCATCCATTGCAAACGAGAGTTCTCCTCATGCAAATTCATCCAGTGATATCTCTGGGCAGTCTGGCTCTGTAAAAACCAGGCAAACTGTTCCATC TGGTCCCTTTGGCTCAACTTCCAGTGGAGGCATAGTGAATAACCCTAACAACCTCACAATGCAGCAGCAGGCTTTTCACAGCAGAGAGAACCAAGCACCT CCTCGACAGGCAGTTGTGCTTGGAAATGGAATGCCTGCAAACGCAAGCCAAGGTGCAGATCATACTCTGCCTTCAAAAAATGCATTAAACAGCTCAGAAA CTTCACAGACACAGCAATTCAGGCAGCTGAATCGATCTTCTCCACAATCTGCTGGTCCTTCTAATGACGGAGGCTTGGGCAACCACTTCTCTTCACAAGG CAGGCCAGCTGTCCAGATGGCACAACAGCGCACTGGGTTCACTAAACAGCAGTTGCATGTTCTGAAGGCTCAAATTCTAGCATTTAGGCGACTGAAGAAA GGAGAAGGTACTCTTCCACAAGAGCTTCTTCGAGCTATTGCTCCACCACCCCTTGAGTTGCAGCTGCAGCAACAACTTCTCCCTGCAGGAGGAAGTAATC TGGACAGGTCGGGTGGAAAGATTGCTGAAGACCAAGCAAGGCATCTGGAGTCCAATGATAAGGGTTCGAAAGCAATGCTATCTATGAACGGACAGAATTT TTCTAAAGAGGAAGTTTTTACTGGTGATGAGAAAGCAACCGTCTCAACCATGCATATGCAAAAGGCACCGGCTGTGATGAAGGAACCCACTCCCCTTGTG GCTTCTGGGAAAGAAGAGCAGCAAACTGCTACATGTTCTGTCAATTCAGACCAGGAGACTGAACATGGACTTCTGAAAACTCCTGTTAGAAGTGATCTAG CAGCAGATAGGGGAAGGGGCGTTGCTTCACAGTTTCCTGCATCTGATGCTATGCAAGCTAAGAAACCTGCACAAGCAAGCACTGTGGTCCAGCCGAAAGA TACCGGCTCTGCCAGAAAGTATCATGGACCATTATTTGATTTTCCCTTTTTTACTAGGAAACATGACTCTGTTGGGTCAACTGGGATGATTAACACGAAT AATAACCTAACATTGACCTATGATGTCAAAGATCTTCTTTTTGAGGAAGGCATGGAAATGCTTAACAAGAAAAGGTCAGAGAATTTGAAGAAAATCAATG GTCTACTAGCAGTAAATTTAGAGAGGAAAAGGATTAGACCAGATCTTGTGTTGCGGTTACAGATTGAAGAGAGAAAGCTTAGGCTTTTGGATCTACAGGC GCGTTTAAGGGATGACGTTGATCAACAGCAACAGGAAATCATGGCAATGCCTGACAGACTATATAGGAAGTTTGTTCGGCTATGTGAGCGTCAACGGATG GAGCTGACAAGGCAGGTACAGGCCTCTCAAAAAGCCATAAGAGAGAAGCAATTGAAATCCATCATGCAGTGGCGCAAGAAACTTCTTGAGACTCATTGGG CCATCCGGGATGCACGTACTGCCCGTAACAGAGGAGTTGCTAAATACCATGAGAGAATGTTGAGGGAGTTTTCAAAGAGAAGGGATGATGACCGAAATAA AAGGATGGAGGCATTGAAGAACAACGATGTTGAAAGGTATAGAGAAATGTTGTTGGAGCAACAGACTAGCATCTCAGGCGATGCTTCTGAGAGATATGCC GTTCTCTCGTCATTCTTGACTCAGACAGAAGAATATCTCCATAAGCTGGGAGGTAAAATAACAGCTGCTAAGAATCAGCAGGAAGTGGAGGAGGCAGCTA ATGCCGCAGCAGGAGCTGCACGACTGCAGGGCCTATCAGAAGAAGAAGTACGAGCAGCTGCAGCTTGTGCTGGTGAGGAAGTATTGATAAGAAACCGGTT TGTGGAAATGAATGCACCCTGGGACAGTTCATCTGTTAACAAATATTACAATCTTGCACATGCTGTGAATGAAAGGGTCATAAGGCAACCATCTATGTTA CGAGTTGGAACCTTACGAGACTATCAGCTTGTTGGGTTGCAGTGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATCTTGGCAGATGAGATGGGGC TTGGAAAGACTGTACAGGTGATGGCATTGATTGCTTATCTAATGGAATTCAAAGGAAACTATGGACCACATCTTATAATCGTTCCTAATGCTGTTTTGGT GAATTGGAAGAGCGAGCTACACAACTGGCTGCCATCTGTGTCCTGCATTTATTATGTTGGTGGAAAGGATCAGCGGTCAAAATTATTTTCCCAAGAGGTT TCTGCCATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCAAAACTTTCTAAAGTTGATTGGAAGTACATCATAATTGACG AGGCACAGAGAATGAAGGACAGGGAGTCAGTTTTAGCCCGTGATCTTGATAGATATCGCTGCCAGAGGCGCTTACTTCTCACAGGGACACCACTACAGAA TGACTTGAAGGAGCTATGGTCGCTCTTGAATCTACTTCTGCCAGAAGTTTTTGATAATCGTAAAGCATTTCATGATTGGTTCTCAAAGCCCTTCCAAAAG GAAGCTCCAATGCATGATGGAGAGGATGACTGGCTTGAAACTGAAAAGAAGGTGATCATAATTCATCGACTTCATCAAATTCTAGAGCCTTTTATGCTCA GACGTCGTGTTCAAGACGTGGAAGGTTCACTTCCACCCAAGGTTTCCATTGTCTTGAGGTGTAGAATGTCTTCTATACAGAGTACAATTTATGATTGGAT CAAATCTACTGGCACTATTCGAGTTGACCCTGAGGATGAGAAGCTCAGGGCTCAAAAAAATCCAGCATACCAGCCTAAGGTGTACAAAACTTTAAATAAC AGATGTATGGAGCTCCGAAAAACTTGCAATCATCCTTTGCTTAATTACCCATATTTCAATGACTTATCCAAGGATTTCCTTGTTCAATCTTGTGGGAAAC TATGGATTCTGGATAGGATTCTCATAAAACTTCAAAGAACAGGCCATCGGGTACTACTCTTTAGTACCATGACAAAACTCCTTGATATATTGGAGGAATA CTTGCAATGGCGCCGACTGGTATACAGAAGGATTGATGGAACAACTAGCCTTGAAGATCGTGAATCGGCTATCGTGGACTTTAATAGCCATGATTCAGAC TGCTTTATTTTCTTGCTTAGTATTCGTGCTGCTGGAAGGGGTCTTAATCTTCAGTCAGCTGACACAGTTATCATATATGATCCTGATCCAAACCCTAAGA ACGAGGAACAGGCAGTTGCTAGAGCCCACCGGATTGGACAGACAAGAGAAGTCAAAGTCATTTATATGGAAGCAGTTGTTGACAAAATTTCTAGCTGTCA AAAAGAGGATGAATTAAGAAGTGGAGGCACCGTTGATTTAGAAGATGACCTTGTTGGTAAGGATCGATATATGGGTTCTATTGAGAGCCTAATAAGGAAA AACATCCAGCAATATAAGATTGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGATCAAAGAACAACACATGAGGAGAGGCGAATGACTTTAGAGA CATTATTGCATGATGAGGAGCGGTATCAAGAAACTATGCATGATGTTCCATCACTCCAAGAGGTTAATCGCATGATAGCCAGGAGTAAAGATGAAGTTGA ATTATTTGATCAAATGGATGAAGAGTTTGATTGGACGGAGGAGATGACGAGGTATGATCAGGTACCTAAATGGCTTCGAGCCAGTTCAAAAGAAGTGGAT GGTACTATTGCTATTCTATCAAAGAAACCATCAAAAGCTATCCTTTTTGCTGATGTTATGGGTATGGTTTCCGGTGAAATGGAAACTGAAAGAAAACGGG TGCGGCCAAAGGGGAAAAAGTCTCCTAATTACAAGGAAATCGATGATGAAAATGGAGACTATTCTGAGGCAAGTTCTGACGAGAGAAACGGTTATTCTGC ACATGAAGAAGAGGGAGAAATTCAAGAAATTGAAGATGATGAATCCAGTGATGCTGTTGGGGCACCGCCCATTAATAAGGACCAATCAGAAGATGATGGT CCCCCGTGTGATGGTGGGTATGAGTGTCACGGAGCTTTGGAAAGCACTAGAAATAATGATGTACTAGATGAAGCTGGTTCCTCAGGATCATCCTCTGACA GCCAAAGAGTTACACGAATGATCTCTCCTGTCTCTCCTCAGAAATTCGGGTCACTTTCTGCATTAGATGCTAGACCAGGTTCACTTCCCAAAAAGCTGCC AGATGAATTAGAAGAGGGGGAAATTGCCGTGTCTGGAGATTCTCACGTGGATCACCAGCAATCTGGAAGTTGGATGCATGATCGCGATGAAGGTGAAGAT GAACAGGTTCTGCAACCTAAGATTAAACGAAAACGTAGTATTCGGCTTCGACCCCGTCACACTGTTGAAAGGCCAGAGGAGAAGTCTAGCAATGATGTGC AACGTGGAGATTCTTGTTTGTTGCCATTCCAAATGGATCATAAATATCAAGCACAGTTGAGGAGCGATACTGAAATGAAAGCATTAGTAGAGCCTAGTGG ATTCAAGCATGATCAGATTGATTCCTCAACAAGTAGGCGAAATTTACCTTCAAGAAGAATAGCCAAAACACCTAAGTTACATGCTTCGCCAAAATCTGGC AGATTGCATTTGCAGTCTGCTCCAGCAGAGGATGCTACTGAACACTCCAGAGTGAGTCTGGATGGTAAAGTTCCAAGTACAAGTGGTACTTCATCTTTGG GCACCAAGATGTCTGATGTCATCCAGAGAAGGTGTAAGAATGTTATTGGCAAGTTCCAAAGGAGGATAGACAAGGAAGGACAACAAATTGTACCTCTTCT AGCTGATTTGTGGAAGAGGATTGAAAATTCTGGTCACGTAAGTGGTGCTGGAACTAATCTTTTGGATTTACGGAAGATTGAACAGCGTGTTGACAGATTG GAGTATAGTGGAGTGATGGAGCTTGTGTTTGACGTGCAATTCATGTTAAAGGGTGCAATGCAATTTTATGGGTTCTCACATGAGGTTAGAACTGAAGCAA GAAAGGTGCATGATCTCTTTTTTGATATCTTGAAGATTGCATTTCCAGACACCGATTTCCGAGAGGCCAGGAACGCTCTATCTTTCTCTGGCCCATCATC AACTTCCGTTTCTGCTCCGTCTGCAAAACAAGCTGCTCTTGGCCTAAGCAAGAGAAACAAGTCAATAAATAATGTGGAACCTGACAACAGCACTACCCAT AAGCCAATGCAGCGAGGATCCATTCCTAATAGTGAAGACATTAGGAGCGTCCGTGTGCCCCAGAAGGAAACAAGGGTTGGGAGTGGAAGTGGCAGTAGTA GGGAACAATATCATCAGGATGATTCTCCACTGCATCCAGGGGAGTTAGTTATCTGCAAGAAGAAGAGGAAAGACCGGGACAAGTCAGCAGTGAGGTCAAG GACTGGATCAAGTGGTCCAGTCTCCCCCCCTAGCATGGGCCGTAATATCACGAGTCCTGTTTTGAATTCAATACCTAAAGATGCGAGACTGAACACTAGT CCTGTTTTGAATTCAATACCTAAAGATGCGAGACTGAATACTAGTCCTGTTTTGAATTCAATACCTAAAGATGCGAGACTGAGCCAGCAGAATACGCATC AGCAAGGGTGGGTGAACCAACCACAACCACCAAATGGTGGTGCGGGGAGTGTTGGTTGGGCAAATCCTGTAAAGAGGTTGAGGACAGATGCTGGTAAAAG AAGGCCGAGCCATTTATGA
AA sequence Show only first row Show all	>Potri.014G086500.1 pacid=42762998 polypeptide=Potri.014G086500.1.p locus=Potri.014G086500 ID=Potri.014G086500.1.v4.1 annot-version=v4.1 MQSGGGGGGGPSWVGPAGRAGSTSSAAASPSSSSSSAAVWNLQLGFDSVQQQQQQQQSRQALQQQLLRKPEGNETLLAYQAGTLQGVTGGNNFASSPGSM QIPQQSRQLFDLARQHGSSQDGQNRNQGVEQQALNPIQQAYLQYAFQAAQQKSALAMQSQQQAKVGTLGSPAGKDHDMRVGNLKMQELMSMQSANQAQAS SSKNPSEHFSRGEKQVEQGQQQASEQRNEQKSPIQPTAIGQLMPANVTRPMQAPQVQQNIQNMANNQLTMAAQMQAMQAWALERNIDLAQPANANLMAKL IPVMQARMAAQLKANENNTSGQSSHLPVSKPQVASPSIANESSPHANSSSDISGQSGSVKTRQTVPSGPFGSTSSGGIVNNPNNLTMQQQAFHSRENQAP PRQAVVLGNGMPANASQGADHTLPSKNALNSSETSQTQQFRQLNRSSPQSAGPSNDGGLGNHFSSQGRPAVQMAQQRTGFTKQQLHVLKAQILAFRRLKK GEGTLPQELLRAIAPPPLELQLQQQLLPAGGSNLDRSGGKIAEDQARHLESNDKGSKAMLSMNGQNFSKEEVFTGDEKATVSTMHMQKAPAVMKEPTPLV ASGKEEQQTATCSVNSDQETEHGLLKTPVRSDLAADRGRGVASQFPASDAMQAKKPAQASTVVQPKDTGSARKYHGPLFDFPFFTRKHDSVGSTGMINTN NNLTLTYDVKDLLFEEGMEMLNKKRSENLKKINGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARLRDDVDQQQQEIMAMPDRLYRKFVRLCERQRM ELTRQVQASQKAIREKQLKSIMQWRKKLLETHWAIRDARTARNRGVAKYHERMLREFSKRRDDDRNKRMEALKNNDVERYREMLLEQQTSISGDASERYA VLSSFLTQTEEYLHKLGGKITAAKNQQEVEEAANAAAGAARLQGLSEEEVRAAAACAGEEVLIRNRFVEMNAPWDSSSVNKYYNLAHAVNERVIRQPSML RVGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSVSCIYYVGGKDQRSKLFSQEV SAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQK EAPMHDGEDDWLETEKKVIIIHRLHQILEPFMLRRRVQDVEGSLPPKVSIVLRCRMSSIQSTIYDWIKSTGTIRVDPEDEKLRAQKNPAYQPKVYKTLNN RCMELRKTCNHPLLNYPYFNDLSKDFLVQSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSHDSD CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSCQKEDELRSGGTVDLEDDLVGKDRYMGSIESLIRK NIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETMHDVPSLQEVNRMIARSKDEVELFDQMDEEFDWTEEMTRYDQVPKWLRASSKEVD GTIAILSKKPSKAILFADVMGMVSGEMETERKRVRPKGKKSPNYKEIDDENGDYSEASSDERNGYSAHEEEGEIQEIEDDESSDAVGAPPINKDQSEDDG PPCDGGYECHGALESTRNNDVLDEAGSSGSSSDSQRVTRMISPVSPQKFGSLSALDARPGSLPKKLPDELEEGEIAVSGDSHVDHQQSGSWMHDRDEGED EQVLQPKIKRKRSIRLRPRHTVERPEEKSSNDVQRGDSCLLPFQMDHKYQAQLRSDTEMKALVEPSGFKHDQIDSSTSRRNLPSRRIAKTPKLHASPKSG RLHLQSAPAEDATEHSRVSLDGKVPSTSGTSSLGTKMSDVIQRRCKNVIGKFQRRIDKEGQQIVPLLADLWKRIENSGHVSGAGTNLLDLRKIEQRVDRL EYSGVMELVFDVQFMLKGAMQFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFREARNALSFSGPSSTSVSAPSAKQAALGLSKRNKSINNVEPDNSTTH KPMQRGSIPNSEDIRSVRVPQKETRVGSGSGSSREQYHQDDSPLHPGELVICKKKRKDRDKSAVRSRTGSSGPVSPPSMGRNITSPVLNSIPKDARLNTS PVLNSIPKDARLNTSPVLNSIPKDARLSQQNTHQQGWVNQPQPPNGGAGSVGWANPVKRLRTDAGKRRPSHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	0	1
AT3G50370			unknown protein		Potri.007G043300 [exp]	1.41	0.9147
AT1G72300			Leucine-rich receptor-like pro...		Potri.001G161000 [exp]	2.64	0.8789
AT1G11950			Transcription factor jumonji (...		Potri.011G009700 [exp]	2.82	0.8896
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	3.46	0.9025
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	3.46	0.9121
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	8.94	0.8478
					Potri.002G115501 [exp]	9.00	0.8769
AT5G11700			unknown protein		Potri.006G234500 [exp]	9.16	0.8571
					Potri.017G152701 [exp]	9.79	0.8519
AT2G27950			Ring/U-Box superfamily protein...		Potri.009G003500 [exp]	10.44	0.7934

Compare expression of checked genes

Potri.014G086500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.