Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46040 248 / 1e-73 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT4G11400 214 / 2e-61 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 146 / 4e-37 GYRB3 DNA GYRASE B3 (.1) AT1G26580 122 / 2e-29 unknown protein AT1G13880 108 / 4e-25 ELM2 domain-containing protein (.1) AT2G03470 105 / 7e-24 MYB ELM2 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161100 [exp] 1006 / 0 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 332 / 6e-105 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 268 / 6e-84 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.017G091900 [exp] 135 / 8e-34 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 132 / 9e-33 AT1G26580 219 / 2e-65 unknown protein Potri.010G159700 [exp] 126 / 2e-30 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 113 / 3e-26 AT1G26580 280 / 3e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014762 [exp] 426 / 3e-141 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 416 / 9e-138 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 177 / 3e-50 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 178 / 5e-49 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10026655 [exp] 120 / 1e-28 AT1G26580 237 / 3e-72 unknown protein Lus10021636 [exp] 114 / 6e-27 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10000680 [exp] 114 / 9e-27 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10004658 [exp] 114 / 1e-26 AT1G26580 243 / 1e-74 unknown protein Lus10037097 [exp] 107 / 4e-24 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 102 / 1e-22 AT1G26580 253 / 1e-77 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G086700.6 pacid=42764270 polypeptide=Potri.014G086700.6.p locus=Potri.014G086700 ID=Potri.014G086700.6.v4.1 annot-version=v4.1 ATGACAGGATGGTCAATGATAGCTAATGATTTTACAAAAAAACCACAAAGAAAGATAGCTCCGGACGGGTTTTGGGTGGATCTTGAGCCGAATTCAAAAG GGTCCGTTTTGAAAAGCGAACTCGATTTCCAGCTCAGGAGCCGTTTCGATAAGTTTCTGGACTCGTTTTTCAAAGAGATTTGCGGGTTAGATAGTTGTTT ATGGATTCTACCTCCAATGCTTGGAAATGGGCAGTTTGTAGATTTGCTTAAACTGTTTTTAGCTGTGAGCGAGAAAGGTGGGTATGGTGTTGTTTCTGAA AATGGGTTGTGGGATTTGGTCGCTCGAGAGTTTGGGTTTGGATTGAACCTTGCCCCGACTGTGAAATTGGTTTATATTAAGTACTTAGACTCCTTGGAGA GGTGGTTAGAGAGGCTTCTTGTTGATGGTATAGGATTGAACGCTGAGTTGAGTGATAGGGGGGTTAATGTGGGTGGGGCTTTGATGGAATTAGGGGCGGA GTTTAAAGGGTTGTTATCTGAAATGCCAGAGAATGAGTTTTTGGAATTGAATTCGGAGTTGAATGTGAATGCTGAGGTGGAGTCTTATGAGAGTGAGAAG TTTGCCGAGGATGAAGAATCATTGCATATAGACTCAACTAAGAGTGGTGTTGATTTTGTGGAAGTTGGGGAATCAGGTGATAATGTAGTAAAGAGTTTCA TGATGGACGGTTCTTTTTCTAACGAGGATGTAAAAGGCAAGGATGTTGATGAAAATTTGATATCTGATTCAAGGAAAAGTGAGAAAGTGGAAAATGAGGA TGAGGTGAAGAGCGTGGTGGTCGTGGAAACTGATGGAGATGAGGAAGGAAATAAGGGTGATAACAGTGAGATTGAGGAACTGGATTTAGCAACTTTTGAG GAATCTGTTTCTAGTCGTAAGAGGAAACGGGATTCCATTTATAGAATGCTGAACTGGGTTACTGAGATTGCAAAAGATCCATGTGATCCCGTGGTTGGAT CGTTACCTGAGTGGTCAAAGTGGAAAAGTTACGGGAATGAAGAATGCTGGAAGCAGGTTTTGGTGACCCGGGAATCGTTGTTTCTGAAAAGAAATGCTGA TTCAACTTCAAGTGCAGAGGGGTTTGTTAAGCAGAAATATCAGAAGATGCATCCATGTATGTACGATGACCATGCTGGATCTAGTTACAATCTTAGAGAG AGGTTAAAATGTAGAAAGCTTTTTCCTGGGGAAACATCGTCTCAAGCACTTGTTTGCTCACAGTCATCTTCTGCAGCCACCCAAACTGATTCAGATTCTT GCATGGAAGGGGTTTATGATGGTGATTCTTCAACTGAATGTTCAGTGCTTGACCTGCCAATTACAAAGAGAATTCCTGTGGGGCCAGTTTTTCAGGCTGA AGTACCAGAATGGACTGGCATGGCTTCTGAAAGTGACTCAAAGTGGCTTGGGACTCGGGTTTGGCCACTTGAAACTTCAATCAACAAATTTGTTATTGAA AGGGAACCTATCGGTAAGGGAAGGTCAGATTCCTGTGGTTGCCAAGTGCCGAAATCTATCAAATGTGTCAGATTTCACATTACTGAGCGAAGGTCGAGAG TGATGCGTGAACTGGGGAAGGCTTTTAATCAATGGAGATTTGATAAGATGGGTGAAGAAGTAAAACTCTCCTGGTCGTTGGAAGATCAAAAGAAGTTTGG AGCTATAGTGAGGTCAAATCCTCTATCTCTTGATAAGTGTTTTTGGGACGAGATATTCCGATGTTTCCCAAGTAGGAGAAGGGAAGATCTGGTGAGCTAT TACTACAATGTATTTCTTTTGCAGCGCAGAGCAAACCAGAATAGGTCCACTCCAGACAGCATCAATAGTGATGATGATGAATCAGAATGTGAATTAGTAA ACTATGGCTCTAGGCGTGAGGCAGTCAATTCACCAGGCTCCCTCATATCAGCAAAGAAGCAACATAAATATGTTAAATAG
AA sequence Show only first row Show all	>Potri.014G086700.6 pacid=42764270 polypeptide=Potri.014G086700.6.p locus=Potri.014G086700 ID=Potri.014G086700.6.v4.1 annot-version=v4.1 MTGWSMIANDFTKKPQRKIAPDGFWVDLEPNSKGSVLKSELDFQLRSRFDKFLDSFFKEICGLDSCLWILPPMLGNGQFVDLLKLFLAVSEKGGYGVVSE NGLWDLVAREFGFGLNLAPTVKLVYIKYLDSLERWLERLLVDGIGLNAELSDRGVNVGGALMELGAEFKGLLSEMPENEFLELNSELNVNAEVESYESEK FAEDEESLHIDSTKSGVDFVEVGESGDNVVKSFMMDGSFSNEDVKGKDVDENLISDSRKSEKVENEDEVKSVVVVETDGDEEGNKGDNSEIEELDLATFE ESVSSRKRKRDSIYRMLNWVTEIAKDPCDPVVGSLPEWSKWKSYGNEECWKQVLVTRESLFLKRNADSTSSAEGFVKQKYQKMHPCMYDDHAGSSYNLRE RLKCRKLFPGETSSQALVCSQSSSAATQTDSDSCMEGVYDGDSSTECSVLDLPITKRIPVGPVFQAEVPEWTGMASESDSKWLGTRVWPLETSINKFVIE REPIGKGRSDSCGCQVPKSIKCVRFHITERRSRVMRELGKAFNQWRFDKMGEEVKLSWSLEDQKKFGAIVRSNPLSLDKCFWDEIFRCFPSRRREDLVSY YYNVFLLQRRANQNRSTPDSINSDDDESECELVNYGSRREAVNSPGSLISAKKQHKYVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.014G086700 [exp]	0	1
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	3.00	0.7869
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	5.29	0.7507
AT3G55160			unknown protein		Potri.004G128601 [exp]	10.81	0.7288
AT2G06040			unknown protein		Potri.006G142200 [exp]	11.22	0.7432
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.010G217600 [exp]	14.14	0.7472
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G070200 [exp]	19.74	0.7380
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	23.30	0.7542
					Potri.012G020400 [exp]	24.24	0.6866
ATMG00750		ATMG00750.1, OR...	GAG/POL/ENV polyprotein (.1)		Potri.001G204350 [exp]	24.95	0.6476
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	29.34	0.7121

Compare expression of checked genes

Potri.014G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.