Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00340 863 / 0 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 576 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 344 / 1e-104 S-locus lectin protein kinase family protein (.1) AT4G27290 338 / 2e-103 S-locus lectin protein kinase family protein (.1) AT4G11900 327 / 1e-98 S-locus lectin protein kinase family protein (.1) AT4G32300 317 / 3e-95 SD2-5 S-domain-2 5 (.1) AT5G24080 303 / 6e-94 Protein kinase superfamily protein (.1) AT1G11410 311 / 1e-92 S-locus lectin protein kinase family protein (.1) AT1G11300 319 / 4e-92 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G34300 305 / 5e-91 lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 568 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 559 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 557 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 348 / 4e-107 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 345 / 1e-105 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 342 / 2e-104 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 342 / 3e-104 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G411400 [exp] 340 / 7e-104 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 340 / 9e-104 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029802 [exp] 514 / 2e-170 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 489 / 4e-161 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 444 / 7e-145 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 433 / 1e-139 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 366 / 1e-113 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10033748 [exp] 349 / 1e-107 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 343 / 6e-105 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 339 / 3e-103 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 347 / 6e-102 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 347 / 9e-102 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.014G086900.1 pacid=42763126 polypeptide=Potri.014G086900.1.p locus=Potri.014G086900 ID=Potri.014G086900.1.v4.1 annot-version=v4.1 ATGCCGCTGATGATCAGTGAAATGTCACTAGCCATCTTCTTCGCTTTCATCCTCTCCCTTCTCTTACCAACCTCAAATGCCTTGCTTGTTTCCAAATTTG AAACAAACAACACATTTACACCATCAACTCCCTGCAACCCAATACAAAGCAGTAGAAGCAAGAAATTGGAGACTGCCAATGTCCTTATCACAGGAAACTC AACCATTTCAAGCCTAAACAAGACATTCAATCTGGGTTTCGTTAACCCAGGTGGGAAACCCAATTGGTACTTGGCCATTTCGTATGCTTCAATTCCAACA CCACCAATAGTTTGGGTAGCAAATCGTGAAAAACCCATTACCAATCTCACCTCTACAAGGCTAGAAATCACAGCGGAAGGCAAACTGGCCATCATTGCAT TACCGGGTTCAACGATTTGGCAAAGCACAAACACAGAGGAAGCAAGAGGGTTGCTCCTTCAAGAGAATGGAAATCTTGTTCTTTTATCGGCCGAAGGGTT GATTATTTGGCAAAGTTTCGATTTTCCAACAGATACATGGCTGCCAGGCATGAATATTACAAGTGAAAGATCTCTAATTTCATGGAGGAGCATAAACGAT CCATCGCCTGGTTTATTCTCTTTGAGGATAAACCCGCTAGGGTTTAATGAATTTGAGCTTGTTTATAACAAGAGTGCCAAGTATTGGAGTACAGGTAATT GGACTGGTGATGCATTCAATGGTGTGCCTGAAATGACTATTCCTTACATTTATAAGTTCCATTTTTCGGATCCTTTTACGCCAAGTGCATCCTTTTGGTA CACAGAGAGGGAATTAGATGGTGGTTTAAGGCCACCATTGACTAGGTTTCAAGTTGATGTTATTGGGCAGTTGAAGCAGTACACTTGGACTCAGCAGAAT GAGTATTGGAACATGTTTTGGTCACAGCCAGACAATAAGTGCAGAGTTTATGGATTATGTGGGAATTTGGGTGTTTGTAATAGCACATTGTTAAAGCCTT GTGTTTGTGTTTCTGGGTTCATTCCTGTTAGTGATTATGATTGGGAGTCTGAGGATTATACTGGTGGTTGTGTCAGAGAGAGTAGGGATTTGTGTGAAGA GAGTGATGGGTTTATGGAGTTTGGTGTTGTGAGATTTGAGGGAGCGGCTATGGTGTCTTTTGGGGGGACTAGGAATGTTTGTGAGAGGACTTGTTTGAGT AATTGTTCATGTATCGGTTTGTTTCACGATGGTAAGACACACTTGTGCAAGAATCTATATGGATCTTTGTTGAATTTGAGAAATTCCAGTTCTGATAGTA CTTTTCAAGATGTGTTATATGTCAGGGTGCCGAAGGAGGGGATTGTGAGGAAGGGTGTGTCGAAATCTGTGCTTTTGATTGGTAGCATTGGTGGGTCAGT TGTGCTTTTGGGGCTGGTGGCAGGGATGCTGCTGATTTTGAGAAAGAGAAGAAAGAACGGCAAGGGTGTGGAAGGAGATGGTGTGTTTCCAGGGTTGAAT TTGAAAGTGTTTACTTATAAAGAGCTTTGTGCTGCAACTCGAGGCTTCTCGGATAAACTTGGACATGGTGGATTTGGGGCAGTGTTTCAAGGCGAGTTGT TGGATTCTACTCTTGTTGCTGTGAAACGCCTTGAAAGGCCAGGCAGTGGAGAGAAAGAGTTCAGGGCAGAGGTGTGTACTATTGGAAACATTCAGCATAT CAATCTTGTCAGGCTCAGAGGATTTTGCTCAGAGAGTTCTCACAGGCTTTTAATTTATGATTACATGCCAAATGGCCCTTTGAGTGCGTATCTGCGACGA GATGGTCTGAATTTGATCTGGGATGTTAGATTTCGTGTAGCAGTTGGTACTGCTAGAGGAATTGCATATTTACACGAGGAATGTAGAGATTGTATTATCC ATTGTGATATCAAGCCAGAAAACATCCTTTTGGATAGTGATTACACAGCTAAGGTATCTGATTTTGGCTTAGCAAAGCTTATAGGTCGCGACTTCAGTAG AGTATTAGCTACCATGAGAGGTACCTGGGGCTATGTTGCACCAGAATGGATATCTGGTGTGGCAATTACCACGAAAGCAGATGTTTATAGCTACGGAATG ACATTGTTGGAATTGCTTGGAGGCCGTAGAAATGTAGAGGCACCGCCATCTGCTCGTGGTGCTGGTGGCAGGGAGGGTGAAAAGGCAGAGAAATGGTTTT TCCCTCCATATGCTGCACAGAAAATAATCGAAGGCAATGTGGCAGCAGTGGTGGATGATAGGCTAGGCAGCGCATATGATATTGAGGAAGCTCAGCGTGT TGCATCGGTTGCCGTTTGGTGCATACAGGATAACGAGGAAATGAGGCCTACAATGGGAATGGTAGTGAAAATGCTAGAAGGGGTAGTCGAAGTGACCACT CCTCCACCACCAAAATTGTTACAAGCACTGGTCTCCGGGGAGTCTTATCATGGTGTTCAGATAGATTCTGGTAAGGGAGTATCTATTGGTGGTGATTGTT GTGGTGATAATGCAGGGGTATATAGTTATGGTTCACCTTCATCTCTTGGTAATGCCTCTTCACCAGCTAGATGA
AA sequence Show only first row Show all	>Potri.014G086900.1 pacid=42763126 polypeptide=Potri.014G086900.1.p locus=Potri.014G086900 ID=Potri.014G086900.1.v4.1 annot-version=v4.1 MPLMISEMSLAIFFAFILSLLLPTSNALLVSKFETNNTFTPSTPCNPIQSSRSKKLETANVLITGNSTISSLNKTFNLGFVNPGGKPNWYLAISYASIPT PPIVWVANREKPITNLTSTRLEITAEGKLAIIALPGSTIWQSTNTEEARGLLLQENGNLVLLSAEGLIIWQSFDFPTDTWLPGMNITSERSLISWRSIND PSPGLFSLRINPLGFNEFELVYNKSAKYWSTGNWTGDAFNGVPEMTIPYIYKFHFSDPFTPSASFWYTERELDGGLRPPLTRFQVDVIGQLKQYTWTQQN EYWNMFWSQPDNKCRVYGLCGNLGVCNSTLLKPCVCVSGFIPVSDYDWESEDYTGGCVRESRDLCEESDGFMEFGVVRFEGAAMVSFGGTRNVCERTCLS NCSCIGLFHDGKTHLCKNLYGSLLNLRNSSSDSTFQDVLYVRVPKEGIVRKGVSKSVLLIGSIGGSVVLLGLVAGMLLILRKRRKNGKGVEGDGVFPGLN LKVFTYKELCAATRGFSDKLGHGGFGAVFQGELLDSTLVAVKRLERPGSGEKEFRAEVCTIGNIQHINLVRLRGFCSESSHRLLIYDYMPNGPLSAYLRR DGLNLIWDVRFRVAVGTARGIAYLHEECRDCIIHCDIKPENILLDSDYTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGM TLLELLGGRRNVEAPPSARGAGGREGEKAEKWFFPPYAAQKIIEGNVAAVVDDRLGSAYDIEEAQRVASVAVWCIQDNEEMRPTMGMVVKMLEGVVEVTT PPPPKLLQALVSGESYHGVQIDSGKGVSIGGDCCGDNAGVYSYGSPSSLGNASSPAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.014G086900 [exp]	0	1
AT5G26720			unknown protein		Potri.005G001100 [exp]	5.00	0.6559
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	5.83	0.5795
AT5G58000			Reticulon family protein (.1)		Potri.006G185700 [exp]	8.71	0.6500
AT5G67020			unknown protein		Potri.007G044200 [exp]	10.19	0.6351
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	28.77	0.6105
AT3G20720			unknown protein		Potri.011G132800 [exp]	38.15	0.6225
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	49.37	0.5492
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	52.54	0.5980
AT1G31490			HXXXD-type acyl-transferase fa...		Potri.001G128100 [exp]	53.57	0.6028
AT1G48360			zinc ion binding;nucleic acid ...		Potri.002G233800 [exp]	54.08	0.5957

Compare expression of checked genes

Potri.014G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.