Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00335 222 / 2e-73 RHB1A RING-H2 finger B1A (.1.2.3) AT5G41350 162 / 9e-50 RING/U-box superfamily protein (.1) AT5G38895 88 / 7e-21 RING/U-box superfamily protein (.1.2.3) AT3G02290 85 / 1e-19 RING/U-box superfamily protein (.1.2) AT5G15790 84 / 2e-19 RING/U-box superfamily protein (.1.2) AT4G23450 77 / 2e-17 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT4G14220 66 / 3e-12 RHF1A RING-H2 group F1A (.1) AT5G22000 61 / 2e-10 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT5G37250 51 / 7e-08 RING/U-box superfamily protein (.1) AT2G17730 52 / 1e-07 NIP2 NEP-interacting protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161500 [exp] 306 / 6e-106 AT4G00335 159 / 8e-49 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 181 / 6e-57 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.003G129900 [exp] 174 / 2e-54 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.017G100100 [exp] 97 / 5e-24 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.004G114800 [exp] 96 / 8e-24 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.010G140300 [exp] 83 / 6e-19 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.003G161600 [exp] 83 / 7e-19 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 79 / 1e-17 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.016G066400 [exp] 67 / 2e-12 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017788 [exp] 280 / 2e-96 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10032270 [exp] 162 / 2e-49 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10024635 [exp] 160 / 4e-49 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10005084 [exp] 89 / 3e-21 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10034367 [exp] 77 / 8e-17 AT5G38895 215 / 2e-70 RING/U-box superfamily protein (.1.2.3) Lus10004636 [exp] 67 / 8e-14 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10034049 [exp] 66 / 3e-12 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10013606 [exp] 65 / 6e-12 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 64 / 8e-12 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 64 / 1e-11 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.014G087000.5 pacid=42764725 polypeptide=Potri.014G087000.5.p locus=Potri.014G087000 ID=Potri.014G087000.5.v4.1 annot-version=v4.1 ATGGGAGGTTGCTGTTGTTCTTCAAGGAAACCTCATTTACACGGAACGCCCGTGTATTACTATTGTCCACCAGCTTTGGAAGAGCATGGATCCTTAACAT CTCACAACGGCGCAGCCTCTGCATTCACTGCAGGTCTCCTGGTCGAATTGCATTTGAATACATCAACGCCTGATACTTTCCGCCCCCCTCCTGCACCTCT GCCATATGATGTGATTTTGGGATGTCCACAGTCACCGTTTTCTGAATCTGTTCAAGAAACAATTAGTCGTGGTAGTTTTGGAACGTTGGCAACATGTGAA GATCTTGATGAATTGGACTGCGAAACTCAAGCCAGTTCATTGCTTGTCTCTCCAAGGAAGTCAGAAGTGACAAAATTACATGAACCTGTTGCGTCCGCAA CAGAAGAGGAAGATGCTTGTCCCATATGCCTTGAAGAATATGACTTGGAGAATCCAAAACACATAACAAACTGCGAGCATCATTTTCACCTCTCCTGCAT TCTAGAGTGGATGGAAAGGAGTGACACCTGCCCCATATGTGACCAGGGTCAACTTATCATTTATGCGGTTCCTCTGGAGAAGTTCAGAGGTAAAGGAATG AAGTTTAGCAAAACATGGAAACAGGTTTCTCTCTGTTCGTGCCCCCTTGTCCTTGTTAATACTTTGGTTGCTAGTTATGGAATGGATGTGCAGATATCTA CAAGGTTGTTGAAGGGAGTACATGCAAACAATTCACCTCCAAGTTAA
AA sequence Show only first row Show all	>Potri.014G087000.5 pacid=42764725 polypeptide=Potri.014G087000.5.p locus=Potri.014G087000 ID=Potri.014G087000.5.v4.1 annot-version=v4.1 MGGCCCSSRKPHLHGTPVYYYCPPALEEHGSLTSHNGAASAFTAGLLVELHLNTSTPDTFRPPPAPLPYDVILGCPQSPFSESVQETISRGSFGTLATCE DLDELDCETQASSLLVSPRKSEVTKLHEPVASATEEEDACPICLEEYDLENPKHITNCEHHFHLSCILEWMERSDTCPICDQGQLIIYAVPLEKFRGKGM KFSKTWKQVSLCSCPLVLVNTLVASYGMDVQISTRLLKGVHANNSPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.014G087000 [exp]	0	1
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.004G138000 [exp]	4.47	0.7436
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.002G119100 [exp]	4.69	0.7674
AT3G02468		CPuORF9	conserved peptide upstream ope...		Potri.004G106750 [exp]	7.48	0.8043
AT5G11600			unknown protein		Potri.006G238800 [exp]	9.48	0.7730
					Potri.001G078100 [exp]	9.69	0.7947
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.017G142400 [exp]	11.40	0.7715
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	12.04	0.7858
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	16.12	0.7349
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	16.43	0.7921
AT3G57930			unknown protein		Potri.003G211200 [exp]	17.74	0.7434

Compare expression of checked genes

Potri.014G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.