Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46050 517 / 5e-178 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 368 / 1e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 346 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 345 / 5e-108 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 332 / 3e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 327 / 4e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19191 325 / 1e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 329 / 5e-102 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 326 / 1e-101 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 323 / 4e-101 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 372 / 6e-120 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 366 / 5e-116 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 357 / 3e-114 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 350 / 5e-110 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 348 / 5e-110 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 340 / 4e-108 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 344 / 8e-108 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 344 / 3e-107 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 337 / 2e-106 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036375 [exp] 619 / 0 AT2G46050 435 / 7e-146 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030908 [exp] 363 / 1e-111 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015898 [exp] 347 / 3e-110 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 345 / 6e-108 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 345 / 3e-107 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 337 / 4e-107 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 338 / 9e-106 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 340 / 1e-105 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 345 / 4e-105 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033858 [exp] 327 / 4e-104 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G087100.1 pacid=42762478 polypeptide=Potri.014G087100.1.p locus=Potri.014G087100 ID=Potri.014G087100.1.v4.1 annot-version=v4.1 ATGCCGCCAAAAACAAAAACCCTTCTCACCAAATCTCTCTCACTTCTCCCTCCTACTCGACTCAGATCATTAACAACCGTTCCCGAGTCAACTCACTTAA CCGATCCCCACTTAACCCATTCTTTCTGCTCCAGAGCCCTAAACTTCTCTGCCAAAATGGGTTTTCTTCGTGAAGGAAAACAAGTACATTCACATGTTAT AAAGTTGGGATTTTGTAATGTATTGTCCTTGCAAAATCAGATTTTGAATGTTTATATAAAATGCAAAGACTTTAATTATGCGCACAGATTGTTTGACGAA ATGCATGTGAGAAACGTGGTTACATGGAATACTGTGATTTGCGGGCTTGTAGACTGCAGGGGCAGTGATTATGAGTCAAGTGTCTACATGGGTTTTTGTT ATTTTAGGAAAATGCTGCTCGATAAGGTAGGTTTTGATGCCATAACTCTTAATGGGTTGCTTCGCGCATGTCTCGAGTTAAATGATGTCGAGATTGGTAG AGAATTGCATTGTTTTATAGTGAAATTGGGTTTTGCAGTGAATAGTTTTGTCAACAGTGCTCTGGTTGATTTGTATGGGAAATGTGGATTAGTCAAGGAA GCGAGGCGTGCTTTTGATGAAGTATACTGTAGAGATTTGGTGTTATGGAATGTGATGTTGTCTTGCTATGCTATGAATTGCTTAGCTGAAGAGGCTTCCG GTTTCTTTAAGTTAATGCAAGAGGAGAATTTTATGACGGATGGTTTTACATTTTCTAGTATGCTCAATTCATGTGGAACTCTGGGATCTTGTAACCTAGG AAGACAGATCCACGGTCTTTCTATCAAACTGTCTTTTGATTTAGATGTATTGGTGGCTAGTGGCCTTGTTGATATGTATGCAAAGAGTGAAAATATAGAT GATGCTCGCAAGGCTTTTGATGGGATGGCTGCTAGAAATGTAGTCTCATGGAATACTATGGTTGTGGGTTACGGTCGCCTTGGAGATGGGGGGGAAGCTA TGAAACTTCTCATTGGAATGTTTCAAGAAGATTTAAGACCTGATGAAATTACTCTGGCTAGCATTATTAGATCATGCAGCAGTGCATTGACCTCTTGCGA AATTATGCAAGTCAATGCTTATGTACTTAAAAATGGTTTCCATGCCTTTTTATCAATTGCAAATGCTTTAATAAATGCATACTCCAAGGGCGGTAGCATT GCAATGGCACTTCAGTGTTTTAACACAGTTCTGGAGCCTGATCTTGTTACTTGGACTTCACTTATTGGTGCGTATGCATTCCACAGTCTTCCAAAAAATA GTATTGATACTTTTGAGGAGATGTTAGCTGATGGTGTATGGCCAGATCAAATTGTCTTTCTGGAAGTCCTTTCTGCCTGTAGCCACGCAGGGCTAGTAAA TGAGGGGCTTCATTACTTTAGTTTAATGAAAGATTATCATATTTTGCCAGGTTTAGAGCACTATACTTGTCTCATTGACCTTCTTGGTAGAGCCGGTCTC TTGGATGAGGCTTTTAATATTTTGAATTCAATGTCAATTGGGTATAGCTCAGACACCTTGGGAGCATTTATCGGGGCATGTAAAATCCATGGAGACGTAA AATTAGCTAAATGGGCTGCAGAAAAGCTTTTTGAAATGGAGCCAAACAAGCCTGTAAATTATACTCTTATGTCTAGCGTCTTTGCTTCTGAAGGTCACTG GCATGATGTGGCAAGAATACACAAACTGATGAGGGATAGGTGTGGTCACGGAGTTCCAGGTTGTAGCTGGATGGAATATGCTGGTACCATAGATGAAGTT CCTGTCAAAATTTAA
AA sequence Show only first row Show all	>Potri.014G087100.1 pacid=42762478 polypeptide=Potri.014G087100.1.p locus=Potri.014G087100 ID=Potri.014G087100.1.v4.1 annot-version=v4.1 MPPKTKTLLTKSLSLLPPTRLRSLTTVPESTHLTDPHLTHSFCSRALNFSAKMGFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDE MHVRNVVTWNTVICGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKE ARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENID DARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSI AMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGRAGL LDEAFNILNSMSIGYSSDTLGAFIGACKIHGDVKLAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVARIHKLMRDRCGHGVPGCSWMEYAGTIDEV PVKI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46050			Pentatricopeptide repeat (PPR-...		Potri.014G087100 [exp]	0	1
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	5.09	0.8405
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	6.70	0.8311
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	7.74	0.8181
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	11.83	0.8233
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	15.74	0.8287
AT1G03670			ankyrin repeat family protein ...		Potri.018G078200 [exp]	21.54	0.7992
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	22.13	0.7929
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	24.37	0.7957
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	24.39	0.7899
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	26.49	0.7811

Compare expression of checked genes

Potri.014G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.