Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00330 488 / 8e-172 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 399 / 5e-136 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT2G11520 340 / 2e-112 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G06840 235 / 9e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 234 / 3e-68 Leucine-rich repeat protein kinase family protein (.1) AT1G30570 230 / 1e-67 HERK2 hercules receptor kinase 2 (.1) AT3G19300 223 / 5e-66 Protein kinase superfamily protein (.1) AT1G49730 223 / 1e-65 Protein kinase superfamily protein (.1.2.3.4) AT5G45780 219 / 4e-65 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 222 / 5e-64 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161600 [exp] 676 / 0 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 423 / 9e-146 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.018G124600 [exp] 360 / 2e-120 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.006G064200 [exp] 353 / 9e-118 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.016G144100 [exp] 251 / 1e-74 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 246 / 9e-73 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G096400 [exp] 229 / 2e-70 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.003G032100 [exp] 226 / 5e-70 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 226 / 6e-70 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036376 [exp] 545 / 0 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 535 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10018828 [exp] 523 / 0 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 520 / 0 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 417 / 3e-143 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 416 / 3e-136 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10041796 [exp] 345 / 2e-116 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 351 / 3e-116 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 335 / 1e-109 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 294 / 5e-95 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G087200.1 pacid=42764784 polypeptide=Potri.014G087200.1.p locus=Potri.014G087200 ID=Potri.014G087200.1.v4.1 annot-version=v4.1 ATGAAGAGCCCATATTCTCGCTACGCTCGCCGGACCCCAGCCTCCGGCGTAGGGCATACGCCGGACTGTGTTCCATACTCCCCGACATCCTCCTCCCACT CGAGCGGCTCCACCTTGAAGAAACGGAACCCGTTGTCGGTGGCCGCGAAATCAATGGCCGGTGTGTTTGTTGCTTGTTTCACGCCTCCCGAGCCTGAGCC GAACAGTTCAAAGGACTTTGGTTACTCTGAAGAGTTAAAAGCTCCCTCTGTTGCATCTAGTACTTCTGGTGGCAATGAAAGGAGACGAAGTTCAAGAAGA GGTATATATAGCAGTCCAGCTAATTCAGTCCATGGGAGAGAACCTGGGAGTGTAAATTTTACCATGGAGGAAATCAATGCAGCCACAAGGAACTTCTCTC CTACATTCAAGATTGGACAAGGTGGTTTTGGGACAGTATACAAGGGAAGATTCCAAGATGGAACTGTTGTTGCCATCAAACGTGCCAAGAAGAGTGTATA TGATAAGCATTTAGGTGTAGAATTTCAAAGTGAGATTCGAACACTGGCACAGGTGGAGCATTTAAATCTAGTAAAGTTCTATGGATATCTGGAGCATGAA GATGAAAGAATTGTTCTTGTGGAGTATGTTGCCAATGGAACTCTCAGAGAACACTTGGATTGTATTCATGGAAATGTTATTGACCTTGCGGTGCGCCTAG ATATTGCAATTGATGTAGCTCATGCAATCACTTATCTTCACATGTACACAGATCACCCAATTATTCACAGGGACATAAAGTCCTCCAACATCCTCCTCAC AGAAAACTTTCGAGCCAAGGTAGCTGACTTTGGTTTTGCTAGACTGGCAGCTGATAGTGATTCAGGTGCCACCCATGTGTCTACCCAAGTTAAAGGAACT GCTGGCTACTTGGACCCAGAATATTTGAGGACTTATCAATTGACTGAGAAGAGTGATGTTTATTCATTCGGTGTATTGCTGGTTGAACTAGTGACAGGTA GGCGCCCTATTGAAGCAAAAAGGGAAATCAAGGAGCGTATAACTGCAAAATGGGCAATAAAGAAGTTTGCGGAAGGTAATGCCGTTTTAATACTGGACCC GAAACTAAAATGTACCGCCGCAAATAACTTGGCCCTGGAAAAGATTCTTGAACTGGCCTTGCAATGTTTGGCTCCTCACAGGCAGAGTCGGCCAAGCATG AGGAAATGTGCTGAGATTCTTTGGAGTATCCGTAAGGATTACAAGGAACAATCAGCCTCAGATTTTCGTTCTTTTTCTTCTAAATCACAGGGGAGTATTT CAGTAATAACAGAAGAATAA
AA sequence Show only first row Show all	>Potri.014G087200.1 pacid=42764784 polypeptide=Potri.014G087200.1.p locus=Potri.014G087200 ID=Potri.014G087200.1.v4.1 annot-version=v4.1 MKSPYSRYARRTPASGVGHTPDCVPYSPTSSSHSSGSTLKKRNPLSVAAKSMAGVFVACFTPPEPEPNSSKDFGYSEELKAPSVASSTSGGNERRRSSRR GIYSSPANSVHGREPGSVNFTMEEINAATRNFSPTFKIGQGGFGTVYKGRFQDGTVVAIKRAKKSVYDKHLGVEFQSEIRTLAQVEHLNLVKFYGYLEHE DERIVLVEYVANGTLREHLDCIHGNVIDLAVRLDIAIDVAHAITYLHMYTDHPIIHRDIKSSNILLTENFRAKVADFGFARLAADSDSGATHVSTQVKGT AGYLDPEYLRTYQLTEKSDVYSFGVLLVELVTGRRPIEAKREIKERITAKWAIKKFAEGNAVLILDPKLKCTAANNLALEKILELALQCLAPHRQSRPSM RKCAEILWSIRKDYKEQSASDFRSFSSKSQGSISVITEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Potri.014G087200 [exp]	0	1
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.010G110000 [exp]	1.00	0.8146
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.008G149300 [exp]	29.49	0.7283
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	34.20	0.7087
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	47.95	0.6753	Pt-RAB1.5
AT5G50350			unknown protein		Potri.008G012000 [exp]	48.06	0.6805
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Potri.002G218100 [exp]	49.30	0.6992
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.014G151300 [exp]	76.19	0.6874
AT1G58070			unknown protein		Potri.004G222800 [exp]	98.64	0.6800
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	135.53	0.6423
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G464400 [exp]	136.13	0.6415

Compare expression of checked genes

Potri.014G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.