Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46060 904 / 0 transmembrane protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018827 [exp] 917 / 0 AT2G46060 752 / 0.0 transmembrane protein-related (.1.2) Lus10002472 [exp] 432 / 3e-140 AT2G46060 412 / 1e-132 transmembrane protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF12036 [poplar] [flax] DUF3522 Protein of unknown function (DUF3522)
Representative CDS sequence Show only first row Show all	>Potri.014G087300.2 pacid=42764774 polypeptide=Potri.014G087300.2.p locus=Potri.014G087300 ID=Potri.014G087300.2.v4.1 annot-version=v4.1 ATGGCAGAGAATTCGATTCTGTTCTGCTTCCCTTCTTGTTATTTTACGATCCTGTCACGTCTTTTCGTGTTCTTTTCCCTTCTTTTTTGCTGCTCTCATT CAGCAAATCAGTTGGGTCCGTACAATACATTTACTGTTTCCAGTTTTAGTTACCCAACAACTAATGTCAGGCCGTTTGATTTGCGTTACATACGAGTTGA TTTGCCCGCGTGGTTCTCTTCTGTGTCTATAACAGTGCAGTCGGACGTAGACCTTGATGCTAAAAGCATATCAAAGGTTCCTAAGAGCACACTGCCACTC ATCTGCATCAGAGATGGCAGTCCTCCTCTGCCAGATGTCTTAAACAGTTCCCTTATAGAACTAGGATCCTTCTCTAATGGCTCATTTCAAAGAATTCAAG GTCCTCAGAATGTGCAGTGCTATCCAATGCAGAGAAATATAACAGCGACACTCACAAATGAGCAGATATCTCCAGGAGTTTGGTATCTAGGTCTTTTTAA TGGCATTGGACCTACAAGGACACAATCAAAAATGATTATCCGTAGCCCATCATACTCCTTTAGTGCCAACATCAGTGTGGAAGGATGTGCAACATCAACA ATGTGGGGACAGTATTGCAACCAGACAATTGACCCTTTTTCATGTTCTCAAGCTTACAGCTACAATCCGACGGAAATTTTTTCTGGTGCTAACTTACAGA CAATACAAAATGTGGTTTCATGCAAAACTTTTGAAAGTTATTGCCATGGAGAAGGTGAGCCAAAAGTATATGCATTGGAGGTGTTGGGAATAGCAGAACA ATTAAAAATTGTGGCAGCAAATGTCAGTTTCACTGCTGCCCCAACAAATAGCACTGGTAATGCTAGTGTTGCTAACTTATTGTATTTCGCTCGGCATGGT GCAATGCCTTCAATGGCACTGTATGATTATTCTGGTGACATGAGTAAAGCTCCTCTTATCATTCGTAAGCCAAAGGTTGGTCGATGGTTTGTTACTATTT TACCCACTAATCTTTCAAAAGAAGTTGGAGGGATTCAGAATACTAACATGCAAGTTTGCTATTCCATTACATGGCAATTGCTTAATTGTCCAGTGGGGAA GGCTGGATTGAATTGCTCTTCAGAAAAATACATGCTTCAGACAGTTCTCAGGAGAGACTCCACACCCTTTGAATCCTATTATTTGCCCCTCAGTGGAAAA GTGTCCCCAGATTCAGCTGATTTTCCTCTTGAACCCCTTTCAAGCAATTCCTCATACAGCAATGAAACAGATACTTCTTGGACGTATTTTCTCTTGAACA TTCCTCGTGGTGCAGCTGGAGGGAACATCCACATCCGGATGACTTCAGACGTGAAGATAAACTATGAAATATATGCTAGATATGGTGGGTTGCCATCTCT TGACAGTTGGGATTATTATTATGCAAACAGAACAAGAAGCAGTGATGGTTCCATGTTTTTCACGTCGTATAATTCAACTGAAGAAAAGATTGATTTTTAC ATTCTATACGTCAAGGAAGGAACTTGGACATTTGGATTAAGGTCTTTAAATACCACCATCATCCCTTCAAATGATCAGACTGTCATGTCAGTCTCTGTTG AGAGATGCCCAAAAAGATGCTCCTCTCATGGGGCATGCAAAGTAGCTCTGGATGCCAGTGGATTAGCTTCATACAGCTTCTGCTCCTGTGATCGAACGCA TGGGGGATTTGACTGTAGCATCGAGATTGTATCACATCAAGGTCACATATGGCAATCGATTGCTCTAATTGGATCAAATGCTGCAGCTATACTTCCTGCA TATTGGGCTCTTAGGCATAAGGCATTTGCAGAATGGGTTATCTTTACTTCTAGTGGAATTTCAAGTGGATTATATCATGCATGTGATGTAGGCACCTGGT GTGCATTATCCTTTGGCGTCTTACAGTTCATGGACTTTTGGCTGTCTTTCATGGCAGTGGTGAGCACTTTTATATACTTAACCACCATTGATGAAGTCTC TAAACGAGCGATTCACACAGTTGTTGCCATCCTCACAGCCCTAATGGCGATAACTAAGGCAACCAGGTCTTCTAATATTATTCTTGTGATGGCAATTGGG GCACTTGGTCTTCTCATTGGATGGTTGGTAGAATTCTCTACCAATTTAAGCTCACTTTCATTTTCAAGGGGATTCTGTTTAAATGTGCCCACAAGGTGGG AAACCATCGGAGCCCAGCTCAGTAATTTAGTCAAGACACTTTTGAGAAGATTCCGATGGGGTTTTGTGCTAGCAGGGTTTTCTGCCCTGGCCATGGCAGC AATAAGCTGGAAGCTGGAAAGCAGCGAAAGCTACTGGATATGGCACAGTCTGTGGCATGTCACCATATATACATCTTCCTTCCTGTTCCTTTGTTCAAAA GTCGACAAAATTATAAATAGCGAAAATGAAACAACCCCAGATGGAAACTATGGGTTGACGCGGCAGGATTCATTTTCAAGAGCTGAGCCATAG
AA sequence Show only first row Show all	>Potri.014G087300.2 pacid=42764774 polypeptide=Potri.014G087300.2.p locus=Potri.014G087300 ID=Potri.014G087300.2.v4.1 annot-version=v4.1 MAENSILFCFPSCYFTILSRLFVFFSLLFCCSHSANQLGPYNTFTVSSFSYPTTNVRPFDLRYIRVDLPAWFSSVSITVQSDVDLDAKSISKVPKSTLPL ICIRDGSPPLPDVLNSSLIELGSFSNGSFQRIQGPQNVQCYPMQRNITATLTNEQISPGVWYLGLFNGIGPTRTQSKMIIRSPSYSFSANISVEGCATST MWGQYCNQTIDPFSCSQAYSYNPTEIFSGANLQTIQNVVSCKTFESYCHGEGEPKVYALEVLGIAEQLKIVAANVSFTAAPTNSTGNASVANLLYFARHG AMPSMALYDYSGDMSKAPLIIRKPKVGRWFVTILPTNLSKEVGGIQNTNMQVCYSITWQLLNCPVGKAGLNCSSEKYMLQTVLRRDSTPFESYYLPLSGK VSPDSADFPLEPLSSNSSYSNETDTSWTYFLLNIPRGAAGGNIHIRMTSDVKINYEIYARYGGLPSLDSWDYYYANRTRSSDGSMFFTSYNSTEEKIDFY ILYVKEGTWTFGLRSLNTTIIPSNDQTVMSVSVERCPKRCSSHGACKVALDASGLASYSFCSCDRTHGGFDCSIEIVSHQGHIWQSIALIGSNAAAILPA YWALRHKAFAEWVIFTSSGISSGLYHACDVGTWCALSFGVLQFMDFWLSFMAVVSTFIYLTTIDEVSKRAIHTVVAILTALMAITKATRSSNIILVMAIG ALGLLIGWLVEFSTNLSSLSFSRGFCLNVPTRWETIGAQLSNLVKTLLRRFRWGFVLAGFSALAMAAISWKLESSESYWIWHSLWHVTIYTSSFLFLCSK VDKIINSENETTPDGNYGLTRQDSFSRAEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46060			transmembrane protein-related ...		Potri.014G087300 [exp]	0	1
AT3G03560			unknown protein		Potri.013G073400 [exp]	2.00	0.8376
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	6.92	0.7871
AT1G07710			Ankyrin repeat family protein ...		Potri.006G214600 [exp]	7.74	0.7637
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	13.74	0.8000
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	20.07	0.7582
AT5G16120			alpha/beta-Hydrolases superfam...		Potri.017G114800 [exp]	21.72	0.7736
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Potri.008G181500 [exp]	21.81	0.7581
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	25.21	0.7812
AT5G10190			Major facilitator superfamily ...		Potri.007G091800 [exp]	26.15	0.7497
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	27.16	0.7509

Compare expression of checked genes

Potri.014G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.