Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09740 353 / 1e-123 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G61450 328 / 8e-114 ATSYP73, SYP73 syntaxin of plants 73 (.1.2) AT3G45280 316 / 4e-109 ATSYP72, SYP72 syntaxin of plants 72 (.1) AT1G13890 44 / 4e-05 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G61210 43 / 0.0001 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129500 [exp] 374 / 5e-132 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 372 / 2e-131 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.012G066700 [exp] 45 / 3e-05 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.010G160350 [exp] 43 / 0.0001 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.015G049000 [exp] 42 / 0.0004 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023178 [exp] 367 / 4e-129 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10019925 [exp] 358 / 2e-125 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10026495 [exp] 354 / 6e-124 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10015075 [exp] 353 / 8e-124 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10036377 [exp] 358 / 2e-121 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10036118 [exp] 323 / 1e-111 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10014759 [exp] 308 / 7e-102 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10004660 [exp] 48 / 3e-06 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10026653 [exp] 46 / 6e-06 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 47 / 7e-06 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.014G087400.1 pacid=42762341 polypeptide=Potri.014G087400.1.p locus=Potri.014G087400 ID=Potri.014G087400.1.v4.1 annot-version=v4.1 ATGACTGTCATCGATTTGGTTACGCGAGTCGATTCAATCTGCAAGAAATTTGACAAATACGACGTCGATAAGCAGAAAAACCTTAACGCTGCTGGCGACG ATGCTTTCGCTCGCTTATACGCAGTCGTTGAGGCCGACCTCGATGCTGTTCTCCAGAAATCAGAGGCAGCGAAAATAGAGAAAAGCAGGGCTACGGCTGT TGCTATGAATGCAGAGATTCGAAGAACAAAGGCTCGATTACTTGAGGAAATTCCTAAATTACAGAGACTCGCTTTTAAACAGGTGAAAGGGCTATCGAAA GAAGAGCGCGAGGTGAGAAGTGATTTGGTTGCTGCATTAAAAGATAGAATCGAAGCTGTAGCAGATGGAAATATTAGTGCAGCTAAACAAGGTGGAGATT CTGCGCCTTCAGCATCGCATGGAGGAATTAAATTTGATTCAACTTATGATGGAAGATTTGATGATGAGTATTTTCAGCAAACTGAAGAGTCGGATCGGTT TAGGCAGGAATATGAAATGCGGAGAGTGAAACAGGATCAAGGCTTAGATGTTATAGCAGAAGGTTTGGACACTCTGAAAAACATGGCCCATGACATGAAT GAGGAGGTGGACAGACAAGTGCCATTGATGGATGAAATTGATGACAAGGTTGACCGAGCAGCCTCTGACCTTAAAACTACTAATGTGAGACTTAAGGATA CTATAAACAAGATGAGGTCCAGTCGCAACTTTTGTATTGATATCATCCTCTTGGTTATAATCTTAGGCATTGCTGCCTATCTCTACAACGTGCTGAAGTG A
AA sequence Show only first row Show all	>Potri.014G087400.1 pacid=42762341 polypeptide=Potri.014G087400.1.p locus=Potri.014G087400 ID=Potri.014G087400.1.v4.1 annot-version=v4.1 MTVIDLVTRVDSICKKFDKYDVDKQKNLNAAGDDAFARLYAVVEADLDAVLQKSEAAKIEKSRATAVAMNAEIRRTKARLLEEIPKLQRLAFKQVKGLSK EEREVRSDLVAALKDRIEAVADGNISAAKQGGDSAPSASHGGIKFDSTYDGRFDDEYFQQTEESDRFRQEYEMRRVKQDQGLDVIAEGLDTLKNMAHDMN EEVDRQVPLMDEIDDKVDRAASDLKTTNVRLKDTINKMRSSRNFCIDIILLVIILGIAAYLYNVLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.014G087400 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	9.59	0.7938
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009400 [exp]	17.88	0.7741
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.002G261800 [exp]	21.49	0.7723
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036500 [exp]	22.38	0.7851
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.001G425675 [exp]	22.97	0.7726
AT1G32583			unknown protein		Potri.015G101000 [exp]	24.65	0.7547
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.008G013400 [exp]	26.45	0.7832
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	30.19	0.7588
AT1G12210		RFL1	RPS5-like 1 (.1)		Potri.001G443932 [exp]	31.11	0.7627
					Potri.007G005400 [exp]	31.17	0.7555

Compare expression of checked genes

Potri.014G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.