Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41390 327 / 9e-114 PLAC8 family protein (.1.2) AT1G63830 321 / 6e-112 PLAC8 family protein (.1.2.3) AT4G23470 318 / 1e-110 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130700 [exp] 337 / 1e-117 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 330 / 4e-115 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3) Potri.002G161801 [exp] 54 / 1e-09 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017509 [exp] 323 / 1e-112 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3) Lus10014759 [exp] 325 / 1e-108 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10028774 [exp] 302 / 1e-103 AT1G63830 350 / 1e-122 PLAC8 family protein (.1.2.3) Lus10018826 [exp] 301 / 5e-103 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10036377 [exp] 169 / 7e-49 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10000149 [exp] 96 / 1e-24 AT5G41390 103 / 3e-28 PLAC8 family protein (.1.2) Lus10005117 [exp] 42 / 2e-05 AT4G23470 58 / 4e-12 PLAC8 family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G087600.1 pacid=42762298 polypeptide=Potri.014G087600.1.p locus=Potri.014G087600 ID=Potri.014G087600.1.v4.1 annot-version=v4.1 ATGGGGCTGGACGATCAGGTTGAGAAAATGGAGGTGCGTAAGAGTTATAGGAATGTCTGGCACACCAATCTCTTGAGCACCATCTCCGCCGATACTCCTT ATTGTCTGTTCTCATTATTTTGTGGACCATGTGTCTCATACATGCTGCGCAAACGAGCTCTTTACAATGACATGTCAAGGTATGTCTGCTGTGCTGGCTA TCTTCCATGTAGTGGGAAGTGCGGAGAAAGTAAATGTCCTGAACTTTGCCTTGGCACTGAGGTCGTGTGCTGCTTCTGTAATTCAGTTGCCTCAACTCGC TTCCTATTGCAAGATGAATTCAATATACAAACTACACAATGCGACAACTGCATTATTGGATTTATGTTCTGCCTGCAGCAATTAGCATGTATATGTTCAT TAGTTGCTTGCATAACTGGAAATGATGAAATTGGAGACCTTGCCCAGATGCTGAGCTGTTTGTCTGATTTGGTTTATTGCTCGGTCTGCGCATGTATTCA GACTCAGCACAAGGTTGAAATGGACAAGAGAGATGGCAAGTTTGGGCCACAGCCTGCTATGGCAGTTCCTTCGGTGCAGCAGATGTCACGTATTGACCAG CCAATTCCTCCACACGCTGGCTACGCACCTCAACAAGCATATGGCCAGCCTTATGGCTATCCTCCACCCCCGCAAACTCAAGGTTACCCTCCTGCCTATC CACAACCTCATGCTTATCCTCCACATGGCTACTCAAGGTGA
AA sequence Show only first row Show all	>Potri.014G087600.1 pacid=42762298 polypeptide=Potri.014G087600.1.p locus=Potri.014G087600 ID=Potri.014G087600.1.v4.1 annot-version=v4.1 MGLDDQVEKMEVRKSYRNVWHTNLLSTISADTPYCLFSLFCGPCVSYMLRKRALYNDMSRYVCCAGYLPCSGKCGESKCPELCLGTEVVCCFCNSVASTR FLLQDEFNIQTTQCDNCIIGFMFCLQQLACICSLVACITGNDEIGDLAQMLSCLSDLVYCSVCACIQTQHKVEMDKRDGKFGPQPAMAVPSVQQMSRIDQ PIPPHAGYAPQQAYGQPYGYPPPPQTQGYPPAYPQPHAYPPHGYSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41390			PLAC8 family protein (.1.2)		Potri.014G087600 [exp]	0	1
AT5G13090			unknown protein		Potri.003G168500 [exp]	4.89	0.7687
AT1G70780			unknown protein		Potri.008G131600 [exp]	8.00	0.7550
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	16.30	0.8042
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	23.87	0.7435
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.008G040500 [exp]	30.33	0.7638
AT4G33565			RING/U-box superfamily protein...		Potri.017G049300 [exp]	34.98	0.7566
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120300 [exp]	36.64	0.7079
					Potri.017G050200 [exp]	44.36	0.7062
AT2G17705			unknown protein		Potri.005G107700 [exp]	44.98	0.7598
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G070900 [exp]	61.96	0.7421

Compare expression of checked genes

Potri.014G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.