Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28350 1675 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) AT3G61480 1590 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1) AT5G28442 103 / 4e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162000 [exp] 2041 / 0 AT5G28350 1706 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005119 [exp] 1880 / 0 AT5G28350 1682 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) Lus10018824 [exp] 1874 / 0 AT5G28350 1679 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07064 [poplar] [flax] RIC1 RIC1
Representative CDS sequence Show only first row Show all	>Potri.014G087900.1 pacid=42762279 polypeptide=Potri.014G087900.1.p locus=Potri.014G087900 ID=Potri.014G087900.1.v4.1 annot-version=v4.1 ATGTATATGGCATATGGATGGCCGCAGGTTATACCTCTAGAACAAGGACTCTGTCCTTCTTCACAGAAGCATATCATTTATTTCAAAGTCATCAATCGTC TCTTCCTCGTTGTCTCTCCTTCTCACCTTGAGCTCTGGAGCTCCTCTCAGCATAAAGTGAGGTTAGGCAAGTACAAGAGGAATGCAGAGTCGTTGGAGAG AGAAGGCGAGAATTTACTAGCGGTGTGGAGACCTGATACCAAATTGATCGCCATTCTTACATCATCTTTCTTTCTACATATATTCAAGGTTCAGTACTCT GATAAAAGAATACAAATAGGAGGGAAGCAACCTTCTGGTTTGTTTCTTGCTAATGTATCTCTTCTTCTTAGTGAGCAAGTGCCTTTTGCAGATAAGGACT TGACAGTGAGCAATTTTGTAAGTGATAACAAACATTTGCTACTAGGACTTTCCGATGGATCTTTATACAGTATCTCCTGGAAGGGGGAGTTCTATGGAGC TTTCGAACTTGATCCCTGTTCACGTGACAGCAGCGATGCCTCTGTTTCACCTCATTCTTTAGGTAACGGTGTTGCTTCTGGAAGGGCTCCAACAGATTCG GAATCTAATCATAATATCACCAGGAAGACCGCTATTGTGCAGCTGGAGCTTTGCTTGCTGACGAGGTTGCTGTTTGTCTTGTATTCTGATGGACAACTAG TATCATGCTCTATAAGCAAGAAAGGTTTAAAGCAAGTTGAATATATCAAAGCTGAAAAAAAGTTGGGTTCTGGTGACGCTGTATGCATTTCAGTAGCTTC AGATCAACAAATCCTTGCTGTTGGTACCAGAAGAGGGGTTGTTAAGTTATATGACCTAGCAGAATCTGCATCTCTCATTCGTACTGTGTCTTTGTGTGAC TGGGGCTATTCAGTGGATGATACTGGTCCTGTCAGTTGTATCGCATGGACACCTGATTATTCTGCTTTTGCTGTTGGGTGGAAGCTAAGAGGTCTTACAG TCTGGTCTGTATCTGGCTGTCGTTTGATGTCAACAATTCGTCAAATTGGTTTAAGTTCTGTATCTTCTCCAAAGGTTAAGCCAAACCAAGATCGTAAATA TGAACCATTGATGAATGGCACCTCATTGATGCAGTGGGATGAATATGGTTACAGGCTTTATGTGATTGAAGAAGGATCTCTGGAAAGAGTTATTGCATTT TCATTTGGAAAATGCTGCCTTTCCAGAGGAGTTTCAGGAATGACATATGTTTGTCAAGTTATTTATGGCGAAGATCGGTTGCTTGTTGTTCAGTCCGAAG ATACTGATGAACTCAAATTTTTACATCTAAACCTTCCAGTTTCCTATATCTCCCAAAACTGGCCAGTTCAACATGTTGCAGCTAGCAAGGATGGAATGCA CTTAGCTGTTGCTGGCCTCCATGGATTGATCTTATATGATATACGGTTGAAAAAGTGGCGAGTGTTTGGAGATATTACTCAGGAACAAAAGATTCAGTGC AAAGGGTTGTTATGGCTGGGGAAGATTGTTGTTGTTTGCAACTACATTGATTCTTCTAACACGTATGAATTACTTTTTTATCCAAGATACCATCTTGACC AGAGCTCCTTGCTTTGTCGAAAGCCATTGCTTGCTAAACCAATGGTGATGGATGTCTATCAAGACCATATACTTGTCACCTATCGCCCATTTGATGTCCA CATATTCCATGTGAGACTGTTAGGTGAACTGACTCCTTCTAGCACTCCAGATTTGCAGCTTTCTACAGTACGAGAACTTTCTATCATGACTGCAAAGAGC CATCCCGCAGCTATGCGTTTCATCCCTGAACAGCTTCAAAGAGAGTTGGCCTCAAACAATCATATTTCATCTTCAGATTTGATGGACAGAGAGCCTGCAA GATGTTTGATATTGAGAACAAATGGGGAACTTTCGCTTTTGGATTTGGATGATGGACGTGAGAGAGAGCTCACCGACTCTGTTGAATTATTTTGGGTTAC ATGTGGTCAATCAGAGGAGAAGACAAGTCTAATTGAGGAAGTCTCTTGGCTGGATTATGGCCATCGAGGCATGCAAGTTTGGTATCCATCTGCAGGTGCT GATCCTTTTATGCAGGAAGACTTTTCGCAGTTGGATCCAGAGCTGGAATTTGATCGTGAAGCGTATCCTTTAGGGCTTCTTCCAAATGCCGGGGTTGTTG TTTGTGTCTCCCAGAGAATGTCCTTTTCAGCTTGCACTGAATTTCCATGTTTTGAGCCATCTTCTCAAGCTCAAACTATATTGCATTGCTTACTCAGACA CCTTCTTCAGAGGGACAAAAAAGAGGAGGCTTTACGGTTAGCACAATTATCTGCAGAAAAGCCTCACTTTTCCCATTGCCTGGAGTGGCTTCTTTTTACT GTATTTGATGCAGAGATTTCAAGGCAAAATGCAAACAAGAACCAGATATCAGTCCCTCTACATGCTGGCAACCGCTCTCTTTTGGAGAAGACTTGTGATT TGATCAGAAATTTCTCCGAGTATTTTGATGTAGTTGTGAGTGTTGCAAGAAAAACTGATGGTCGACACTGGGCAGATTTATTTTCTGCTGCTGGAAGATC AACAGAGTTGTTTGAAGAATGCTTCCAACAGAGATGGTACCGCACTGCAGCTTGCTATATACTTGTGATTGCGAAACTTGAAGGTCCCGCAGTCAGCCAA TACTGTGCTTTACGGTTATTGCAGGCAACACTCGATGAATCTTTATATGAGCTTGCTGGAGAACTGGTGCGCTTCCTGCTCAGGTCTGGAAAGGAATATG ACCAGACACCACCTGATTCAGATAGACTATCTCCCAGATTTTTGGGTTATTTTCTTTTCCGTTCCAGTTACAAGAAGCCATCATTGGACAAGAGTACTTC CTTCAAAGAGCAAAGTGCTCATGTTGCTTCTGTGAAGAACATTTTAGAAAGCCATGCTAGTTATTTGATGTCAGGGAAAGAGCTTTCGAAGCTTGTGGCT TTTGTAAAAGGCACCCAGTTTGATTTAGTGGAATACCTTCAACGAGAAAGATACGGTAGTGCTCGCTTAGAGAATTTTGCATCAGGACTGGAACTAATTG GGCAGAAGCTTCAAATGGGTACATTGCAAAGCCGGTTGGATGCGGAGTTTCTATTGGCTCATATGTGTTCCGTCAAGTTCAAGGAATGGATAGTTGTTCT TGCCACACTCCTAAGACGGACTGAGGTTCTTTTTGATCTTTTCCAGCGTGATATGAGGTTGTGGAAAGCATATAGCGTCACCCTTCAGTCGCACCCTGCA TTTTCCGAATACCATGATCTGCTTGAAGGCTTAGAAGAGAGACTTTCATCTGTCGCAGACTCGCAAGAGAAATGA
AA sequence Show only first row Show all	>Potri.014G087900.1 pacid=42762279 polypeptide=Potri.014G087900.1.p locus=Potri.014G087900 ID=Potri.014G087900.1.v4.1 annot-version=v4.1 MYMAYGWPQVIPLEQGLCPSSQKHIIYFKVINRLFLVVSPSHLELWSSSQHKVRLGKYKRNAESLEREGENLLAVWRPDTKLIAILTSSFFLHIFKVQYS DKRIQIGGKQPSGLFLANVSLLLSEQVPFADKDLTVSNFVSDNKHLLLGLSDGSLYSISWKGEFYGAFELDPCSRDSSDASVSPHSLGNGVASGRAPTDS ESNHNITRKTAIVQLELCLLTRLLFVLYSDGQLVSCSISKKGLKQVEYIKAEKKLGSGDAVCISVASDQQILAVGTRRGVVKLYDLAESASLIRTVSLCD WGYSVDDTGPVSCIAWTPDYSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPKVKPNQDRKYEPLMNGTSLMQWDEYGYRLYVIEEGSLERVIAF SFGKCCLSRGVSGMTYVCQVIYGEDRLLVVQSEDTDELKFLHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYDIRLKKWRVFGDITQEQKIQC KGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKPLLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKS HPAAMRFIPEQLQRELASNNHISSSDLMDREPARCLILRTNGELSLLDLDDGRERELTDSVELFWVTCGQSEEKTSLIEEVSWLDYGHRGMQVWYPSAGA DPFMQEDFSQLDPELEFDREAYPLGLLPNAGVVVCVSQRMSFSACTEFPCFEPSSQAQTILHCLLRHLLQRDKKEEALRLAQLSAEKPHFSHCLEWLLFT VFDAEISRQNANKNQISVPLHAGNRSLLEKTCDLIRNFSEYFDVVVSVARKTDGRHWADLFSAAGRSTELFEECFQQRWYRTAACYILVIAKLEGPAVSQ YCALRLLQATLDESLYELAGELVRFLLRSGKEYDQTPPDSDRLSPRFLGYFLFRSSYKKPSLDKSTSFKEQSAHVASVKNILESHASYLMSGKELSKLVA FVKGTQFDLVEYLQRERYGSARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRTEVLFDLFQRDMRLWKAYSVTLQSHPA FSEYHDLLEGLEERLSSVADSQEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	2.00	0.9103
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.001G218100 [exp]	2.44	0.9007
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	2.82	0.8864	SCD1.2
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	4.24	0.9059
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.010G091500 [exp]	5.19	0.8612	Pt-KAPP.2
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	5.47	0.8704
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	7.74	0.8677
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	9.16	0.8827
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	9.48	0.8860
AT3G09320			DHHC-type zinc finger family p...		Potri.006G087400 [exp]	10.00	0.8255

Compare expression of checked genes

Potri.014G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.