Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46080 430 / 2e-151 unknown protein AT1G01550 372 / 2e-128 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) AT4G01360 241 / 5e-77 unknown protein AT3G61500 112 / 8e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162600 [exp] 559 / 0 AT2G46080 456 / 7e-162 unknown protein Potri.010G171000 [exp] 101 / 7e-24 AT1G01550 69 / 7e-13 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Potri.008G085600 [exp] 87 / 4e-19 AT2G46080 52 / 3e-07 unknown protein Potri.009G055800 [exp] 46 / 2e-05 ND / Potri.003G018700 [exp] 45 / 4e-05 AT1G22030 266 / 2e-87 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036385 [exp] 449 / 6e-159 AT2G46080 434 / 4e-153 unknown protein Lus10018821 [exp] 447 / 4e-158 AT2G46080 431 / 5e-152 unknown protein Lus10005122 [exp] 446 / 1e-157 AT2G46080 432 / 1e-152 unknown protein Lus10007920 [exp] 436 / 8e-154 AT2G46080 433 / 8e-153 unknown protein Lus10005326 [exp] 61 / 3e-10 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10039581 [exp] 59 / 2e-09 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05633 [poplar] [flax] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Potri.014G088600.1 pacid=42764713 polypeptide=Potri.014G088600.1.p locus=Potri.014G088600 ID=Potri.014G088600.1.v4.1 annot-version=v4.1 ATGAGTCAACCACAACAGCCACACCGCCCTTTCTTTCCATTTGGAAATCCTTTCAGGATGTTATCTCCAAAGGGTTCTCAGTTGTCTCCAAGGCTTCTTT CTTTATTAAATACATTTGAGGAGGCATTGGCAGCGAGGTTGCGGAAACTTAATCCTAAAGACAAGGGTGATGTTCTTAGCTTCACGTGGATGAAATTGGC AATGGAGTCACTCTGTGAGACTCATACTGTCATAAAAACACTTATCACAGAACTTGAGCTCCCTGTGACTGAATGGGATGAGAAGTGGATAGATGTGTAC TTGGACATCACTGTGAAGTTGCTTGATATTTGCATTGCTTTTAGCTCTGAGCTCTCGTGGCTGAACCAAGGTCAACTTTTTCTTCAATGCGCCCTGCATA AATTGGAGTCCAACAATTCAGAGAAGTTAATGCAGGCATGTTCTTCCCTAGATAGCTGGAGACAGCACATTGGCTCCAAGAACCCAAGACTGGAAAACTG TAAATCCATCTTAGAGAATCTTGTGGATTCCTTGACTCTGCCTAAGGTTAAGAACTCGGCCAAAGGAAAGGTGTTGATGCGTGCCATGTATGGAGTTAAG GTACAGACAGTATTTGTATGTAGTGTTTTTGCCGCTGCATTTTCAGTTAATTCAAAGAATCTGATAGATTTGGATGTACCCAACACAATATTGTGGGCAC AAGCTTATTCTGATTTGCAAACTACAGTAAATGGAGAAATTAGAGAAGTATTTTCTCGTGGGAAATTTACTTTCTTGAAAGAATTAGATGAAGTTGAGAC AGTTGTGAATAATTTATATCCCATGATCCAAGATGGTATGGGACCTACTGAAGTGGAAGCATTCAGCAGTTCTTTTTCGGATTTGGGGAGGAGAGCAGAA AGACTTTCTCAGGTGCTAGATTTTCTTGCTAAGGAAGTAGATGGCTTTTTCAAAATAGTTTTAAGTGGGCGTGATGCTTTGCTTTGTAACCTGAGAGTGT CTGATACCGTTGCCGACCCATTCCGAGGGAGTAATTCTGAGGGAATAATGGGGAACAGGTTATAG
AA sequence Show only first row Show all	>Potri.014G088600.1 pacid=42764713 polypeptide=Potri.014G088600.1.p locus=Potri.014G088600 ID=Potri.014G088600.1.v4.1 annot-version=v4.1 MSQPQQPHRPFFPFGNPFRMLSPKGSQLSPRLLSLLNTFEEALAARLRKLNPKDKGDVLSFTWMKLAMESLCETHTVIKTLITELELPVTEWDEKWIDVY LDITVKLLDICIAFSSELSWLNQGQLFLQCALHKLESNNSEKLMQACSSLDSWRQHIGSKNPRLENCKSILENLVDSLTLPKVKNSAKGKVLMRAMYGVK VQTVFVCSVFAAAFSVNSKNLIDLDVPNTILWAQAYSDLQTTVNGEIREVFSRGKFTFLKELDEVETVVNNLYPMIQDGMGPTEVEAFSSSFSDLGRRAE RLSQVLDFLAKEVDGFFKIVLSGRDALLCNLRVSDTVADPFRGSNSEGIMGNRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46080			unknown protein		Potri.014G088600 [exp]	0	1
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.003G082700 [exp]	1.41	0.9393
AT1G66070			Translation initiation factor ...		Potri.004G082200 [exp]	4.00	0.8840
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.016G062500 [exp]	5.09	0.8523
AT3G62260			Protein phosphatase 2C family ...		Potri.002G190400 [exp]	11.83	0.8587
AT1G67360			Rubber elongation factor prote...		Potri.001G055300 [exp]	12.56	0.8107
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.010G201500 [exp]	19.28	0.8277
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.007G126900 [exp]	19.97	0.8688
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.008G149700 [exp]	24.24	0.7986
AT3G52105			unknown protein		Potri.009G061800 [exp]	27.78	0.8669
AT1G07400			HSP20-like chaperones superfam...		Potri.018G140600 [exp]	30.38	0.8122	Pt-HSP17.2

Compare expression of checked genes

Potri.014G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.