Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01540 686 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 669 / 0 Protein kinase superfamily protein (.1.2) AT4G02630 514 / 2e-180 Protein kinase superfamily protein (.1) AT4G34500 473 / 5e-165 Protein kinase superfamily protein (.1) AT3G59110 437 / 1e-149 Protein kinase superfamily protein (.1) AT2G42960 431 / 1e-147 Protein kinase superfamily protein (.1) AT1G56720 422 / 6e-144 Protein kinase superfamily protein (.1.2.3) AT5G18500 412 / 3e-140 Protein kinase superfamily protein (.1.2) AT1G09440 410 / 8e-140 Protein kinase superfamily protein (.1) AT3G17420 406 / 2e-138 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026100 [exp] 555 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 490 / 5e-171 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 485 / 5e-169 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.005G139500 [exp] 453 / 4e-157 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 439 / 1e-150 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 439 / 1e-150 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 437 / 7e-150 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 429 / 7e-147 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 411 / 5e-140 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036386 [exp] 685 / 0 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 667 / 0 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 516 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 506 / 6e-177 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 501 / 1e-174 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 481 / 2e-169 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 463 / 8e-155 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10040459 [exp] 442 / 4e-153 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 438 / 3e-150 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 439 / 6e-149 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G088800.2 pacid=42764677 polypeptide=Potri.014G088800.2.p locus=Potri.014G088800 ID=Potri.014G088800.2.v4.1 annot-version=v4.1 ATGTCTGTATACGATGGTGCATTTGTTAACACGGAGCTATCAAAACCTACATCAATCTTTGGTCTCCGTTTATGGGTAGTCATAGGAATCTTATTGGGCT CATTAATAGTTCTTGCCCTCTTTCTCCTCTCTCTTTGCGTTACTTCACGTCGCAAGAACCGACAATTTAAGCTAACAAAGACAGACACTACCCCTCCAAT CTCTAAAGAGATTCAAGAAATCGTGCACTTGCCCGTGCAAGATCACAATCACCATGCGATTCAGGTGCCGGAGATCCAGGTTGGGATCGGGAAGGTGGAG CATAGAGTGGTGTTTTCGAGTGGGGAGAGTAGAGGGACTGCTAGTGGTGGTGAGACGGCGTCGTTTGGGAGTGGAAGTGTGGGGCCTGAAGTGTCGCATC TTGGGTGGGGTAGGTGGTATACTTTGAGAGAGTTGGAGGCTGCTACTGGTGGGTTGTGTGAAGAGAATGTTATTGGTGAAGGTGGGTATGGGATTGTGTA TCGTGGGGTTTTGAGTGACGGGACTAAAGTTGCTGTTAAAAATTTGTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTAGAAGTGGAAGTAATT GGACGAGTACGGCACAAGAATCTTGTCAGATTGCTTGGATACTGTGTTGAGGGTGCTTACAGAATGCTTGTATACGAGTATGTTGACAATGGTAATCTGG ACCAATGGCTACATGGTGATGTTGGAGAAGTCAGCCCGCTAACGTGGGATATTCGTAGGAACATTATTTTGGGAACAGCAAAAGGATTGGCCTACCTTCA TGATGGTCTTGAACCAAAGGTTGTTCATCGAGATGTAAAATCTAGTAACATATTACTGGATCGCCAATGGAACTCTAAGGTTTCTGATTTTGGGCTTGCC AAGCTCTTACATTCTGAGAGAAGTTATGTCACAACACGTGTGATGGGAACATTTGGTTATGTTGCTCCAGAATATGCTTGCACTGGAATGCTGAATGAGA AGAGTGATGTTTATAGTTTCGGTATACTTATCATGGAGATAATTTCTGGGAGAAGCCCTGTTGATTATAGTCGGCCACAAGGAGAGGTGAATCTGGTAGA ATGGTTAAAAACTATGGTTGGGAACCGAAAATCTGAAGAAGTGGTTGATCCCAAGTTACCCGAGATGCCTGCTTCAAAAGCATTAAAACGTGCTCTCCTG GTAGCTCTTAAATGTGTCGATCCTGATGCTACAAAGAGGCCCAAAATGGGACACGTGATCCACATGCTTGAGGCTGATGACTTGCTATTTCGTGATGAAC GTCGAGTTGGGAGAGAACCTTCCCATTCACAGCATGATTATGAACAAGAGAATCATGCTGCTATGAAATTCATTGATAAGCAATCGGGAGAAGGGACTTC AGACACAAGTGAAGGTGAAAGTGGTAGGAAACATCATCAGCCAACTAGATGGAGATAA
AA sequence Show only first row Show all	>Potri.014G088800.2 pacid=42764677 polypeptide=Potri.014G088800.2.p locus=Potri.014G088800 ID=Potri.014G088800.2.v4.1 annot-version=v4.1 MSVYDGAFVNTELSKPTSIFGLRLWVVIGILLGSLIVLALFLLSLCVTSRRKNRQFKLTKTDTTPPISKEIQEIVHLPVQDHNHHAIQVPEIQVGIGKVE HRVVFSSGESRGTASGGETASFGSGSVGPEVSHLGWGRWYTLRELEAATGGLCEENVIGEGGYGIVYRGVLSDGTKVAVKNLLNNRGQAEREFKVEVEVI GRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVGEVSPLTWDIRRNIILGTAKGLAYLHDGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLA KLLHSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVEWLKTMVGNRKSEEVVDPKLPEMPASKALKRALL VALKCVDPDATKRPKMGHVIHMLEADDLLFRDERRVGREPSHSQHDYEQENHAAMKFIDKQSGEGTSDTSEGESGRKHHQPTRWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01540			Protein kinase superfamily pro...		Potri.014G088800 [exp]	0	1
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	7.68	0.8371
AT5G14210			Leucine-rich repeat protein ki...		Potri.001G333300 [exp]	10.90	0.7661
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G019000 [exp]	12.48	0.8271
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237800 [exp]	14.14	0.7944
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	18.00	0.7726
AT3G57062			unknown protein		Potri.016G038300 [exp]	23.91	0.7377
AT3G12150			unknown protein		Potri.006G058400 [exp]	27.12	0.8003
AT2G04845			Acyl-CoA N-acyltransferases (N...		Potri.014G161800 [exp]	41.42	0.7561
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.009G134600 [exp]	43.45	0.7851	RAC4.1
AT1G47740			PPPDE putative thiol peptidase...		Potri.014G042300 [exp]	43.88	0.6934

Compare expression of checked genes

Potri.014G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.