Plant FIBer expression Database

ATSTE24.1 (Potri.014G088900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATSTE24.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01320 757 / 0 ATSTE24 Peptidase family M48 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G162700
[exp]
830 / 0 AT4G01320 744 / 0.0 Peptidase family M48 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018820
[exp]
737 / 0 AT4G01320 719 / 0.0 Peptidase family M48 family protein (.1)
Lus10005123
[exp]
696 / 0 AT4G01320 675 / 0.0 Peptidase family M48 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF01435 Peptidase_M48 Peptidase family M48
CL0126 PF16491 Peptidase_M48_N CAAX prenyl protease N-terminal, five membrane helices
Representative CDS sequence
>Potri.014G088900.1 pacid=42764351 polypeptide=Potri.014G088900.1.p locus=Potri.014G088900 ID=Potri.014G088900.1.v4.1 annot-version=v4.1
ATGGCGTTTCCTTACATGGAAGCTGTAGTTGGTTTTATGATTCTCGTGTATTTCTTTGAGACCTATTTGGATTTGCGACAACGTGCTGCTTTGAAACTGC
CAATTCTCCCAAAAACTCTGGTAGGAGTAATCAGCCAGGAGAAGTTTGAAAAATCTCGAGCTTATAGTCTTGATAAAAGCCACTTCAATTTTGTTCATGA
ATTTGTTACTATACTTCTGGACTCTGCTATTTTGTTCTATGGGATATTGCCTTGGTTTTGGAAGAAATCAGGAAGCTTTGTGGTTTTGGCTGGTTTCAAT
GAGGAGAATGAAATACTCCACACCCTTGCTTTTTTGGCTGGTGTTATGATATGGTCACAGATTACAGATTTGCCATTCTCTCTCTATTCAACTTTTGTGA
TTGAGGCCCGCCATGGCTTCAACAAGCAAACAATATGGCTGTTCTTTAGGGACTTATTCAAAGGAATTTGCCTTGCCATTCTACTTGGCCCCCCAATTGT
TTCAGCAATTATTTTAATAGTACAGAAAGGAGGTCCTTACCTGGCCATTTATCTATGGGCATTCATGTTTGTTCTTTCTCTTGTCATGATGACACTCTAC
CCAGTTTTAATTGCCCCACTCTTCAACAAGTTCACCCCTCTTCCAGAAGGAGAGCTCAGAGAGAAAATTGAGAAACTTGCTTCCTCCCTCAAGTTTCCTT
TAAAGAAGTTGTTCGTTGTAGATGGATCCACAAGGTCAAGCCATAGCAATGCCTATATGTATGGATTCTTTAAGAACAAGCGAATTGTACTTTATGACAC
ATTGATTCAGCAGTGCAAAGACGATGAGGAAATTGTAGCTGTTATTGCCCATGAACTGGGACATTGGAAACTCAATCATACAATGTACTCGTTCATTGCT
GTGCAGATTCTAACATTTTTACAATTTGGAGGATACACTCTTGTGAGGAACTCAACTGATCTCTTCCGAAGTTTTGGATTTGATACACAGCCAGTGCTCA
TCGGTCTGATCATATTTCAGCATACTGTAATACCTCTCCAACACCTTGTAAGCTTTGGCCTTAATCTGGTGAGCCGATCTTTTGAATTTCAGGCGGATGC
TTTTGCTAAAAAGCTTGGTTATGGCTCTGCTCTTCGGGGTGGTCTTGTGAAACTACAGGAAGAAAATTTGTCATCTATGAATACAGATCCTTGGTACTCA
GCATATCACTACTCTCATCCTCCCCTTGTTGAAAGACTCGCAGCAATTGATGAATCGGATAAGAAGGCTGATTAA
AA sequence
>Potri.014G088900.1 pacid=42764351 polypeptide=Potri.014G088900.1.p locus=Potri.014G088900 ID=Potri.014G088900.1.v4.1 annot-version=v4.1
MAFPYMEAVVGFMILVYFFETYLDLRQRAALKLPILPKTLVGVISQEKFEKSRAYSLDKSHFNFVHEFVTILLDSAILFYGILPWFWKKSGSFVVLAGFN
EENEILHTLAFLAGVMIWSQITDLPFSLYSTFVIEARHGFNKQTIWLFFRDLFKGICLAILLGPPIVSAIILIVQKGGPYLAIYLWAFMFVLSLVMMTLY
PVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKDDEEIVAVIAHELGHWKLNHTMYSFIA
VQILTFLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLNLVSRSFEFQADAFAKKLGYGSALRGGLVKLQEENLSSMNTDPWYS
AYHYSHPPLVERLAAIDESDKKAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01320 ATSTE24 Peptidase family M48 family pr... Potri.014G088900
[exp]
0 1 ATSTE24.1
AT2G38670 PECT1 phosphorylethanolamine cytidyl... Potri.006G113900
[exp]
6.24 0.6847
AT4G02450 HSP20-like chaperones superfam... Potri.005G199700
[exp]
11.83 0.7659
AT1G16900 Alg9-like mannosyltransferase ... Potri.011G110800
[exp]
14.49 0.6962
AT5G09590 HSC70-5, mtHSC7... HEAT SHOCK COGNATE, mitochondr... Potri.009G079700
[exp]
15.58 0.7176
AT1G14360 ATUTR3, UTR3 UDP-galactose transporter 3 (.... Potri.016G139100
[exp]
16.00 0.7271
AT1G02100 SBI1 SUPPRESSOR OF BRI1, Leucine ca... Potri.014G047300
[exp]
24.39 0.6123
AT3G13770 Pentatricopeptide repeat (PPR)... Potri.016G051300
[exp]
25.19 0.5943
AT4G12400 Hop3 Hop3, stress-inducible protein... Potri.001G119500
[exp]
34.39 0.7072 STI.2
AT5G54940 Translation initiation factor ... Potri.010G151700
[exp]
38.10 0.6348
AT1G24267 Protein of unknown function (D... Potri.003G169200
[exp]
43.45 0.6239

Potri.014G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.