Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01310 310 / 5e-107 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154600 [exp] 358 / 1e-125 AT4G01310 361 / 4e-127 Ribosomal L5P family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007915 [exp] 308 / 6e-106 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 294 / 9e-100 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1) Lus10033169 [exp] 194 / 1e-62 AT4G01310 238 / 3e-80 Ribosomal L5P family protein (.1) Lus10010251 [exp] 156 / 6e-48 AT4G01310 179 / 2e-57 Ribosomal L5P family protein (.1) Lus10036391 [exp] 63 / 9e-13 AT4G01310 82 / 1e-20 Ribosomal L5P family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF00281 [poplar] [flax] Ribosomal_L5 Ribosomal protein L5 CL0652 [poplar] [flax] PF00673 [poplar] [flax] Ribosomal_L5_C ribosomal L5P family C-terminus
Representative CDS sequence Show only first row Show all	>Potri.014G089100.1 pacid=42764805 polypeptide=Potri.014G089100.1.p locus=Potri.014G089100 ID=Potri.014G089100.1.v4.1 annot-version=v4.1 ATGGCCACTCATTCGCTCTTACGCTCCTTGGCGGCGTCGTTTCACGGCCGATTCCCCACTCTCCCATCGCGCTTAACCGCACGAGCACCGTACGGAACCC AGAATGGGGTGATATCAGTGAGAACCACTGCAGAATTTGTCTTGGTGGACAAATCAGAAGCAGACAAAAGCATTCGGCTCAAAACCACATACCTTGAAAC AATCGTCCCTTTGCTGTTACAAGAGTTCAGTTACACCAACATTGACCAGGTTCCAAGAATTCAGAAGGTTGTGGTGAGTTGTGGGATTGGAGATGCCGCG CAGAGTTCTAAGGAGGTGGAGGCAGCGATAAATGATTTGGCTCTTATCACAGGCCAAAGACCCGTAAAGACGGGGGCCGAGAATGCGGTTAATGCCTTCA AGAGTAGGGAAGCCCGACCACTTGGTATTTATGTTACACTCAGAGGAAATATGATGTACTCGTTCTTAGATCGACTTGTTAACTTGGGGCTGCCTAGAAC AAGGGATTTCCAAGGTGGGACCCCAAACAGCTTTAATCGACAAGGCAACTACAGCATTGGAATTAGCGACCAGAGTGTGTTCCCAGAGATTGATTTTGAT GCAGTTGGTAAACACAGGGGAATGGATGTTTGCATTACAACCACAGCCAACACCGATCAAGAAGCGCAGAGACTCTTGTCTCTCATGGGTATGCCATTTA TAGAAGGTGGTGGTGCCGTTCAGCCTCGCAAGAAGAAATCGAAGGCGCACCACTCTGATTCAAAATCGAAGGAAAGGAGTAGGCGATGA
AA sequence Show only first row Show all	>Potri.014G089100.1 pacid=42764805 polypeptide=Potri.014G089100.1.p locus=Potri.014G089100 ID=Potri.014G089100.1.v4.1 annot-version=v4.1 MATHSLLRSLAASFHGRFPTLPSRLTARAPYGTQNGVISVRTTAEFVLVDKSEADKSIRLKTTYLETIVPLLLQEFSYTNIDQVPRIQKVVVSCGIGDAA QSSKEVEAAINDLALITGQRPVKTGAENAVNAFKSREARPLGIYVTLRGNMMYSFLDRLVNLGLPRTRDFQGGTPNSFNRQGNYSIGISDQSVFPEIDFD AVGKHRGMDVCITTTANTDQEAQRLLSLMGMPFIEGGGAVQPRKKKSKAHHSDSKSKERSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01310			Ribosomal L5P family protein (...		Potri.014G089100 [exp]	0	1	RPL5.2
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.011G130300 [exp]	1.00	0.8623
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Potri.002G036500 [exp]	1.41	0.8305
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.016G002400 [exp]	3.87	0.8300
AT4G03150			unknown protein		Potri.014G135400 [exp]	4.24	0.7517
AT3G59650			mitochondrial ribosomal protei...		Potri.013G126200 [exp]	6.92	0.8265
AT1G61570		TIM13	translocase of the inner mitoc...		Potri.011G149800 [exp]	8.06	0.8227	TIM13.2
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.005G075500 [exp]	10.19	0.7912
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	10.81	0.7777
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.002G249500 [exp]	11.66	0.7535	RAB11.3
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	12.72	0.8072	Pt-PHB3.2

Compare expression of checked genes

Potri.014G089100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.