Plant FIBer expression Database

Potri.014G089200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01290 501 / 7e-161 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G163000
[exp]
1531 / 0 AT4G01290 499 / 1e-159 unknown protein
Potri.004G073400
[exp]
72 / 2e-12 AT4G01290 60 / 5e-09 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036389
[exp]
808 / 0 AT4G01290 483 / 4e-154 unknown protein
Lus10007916
[exp]
800 / 0 AT4G01290 507 / 3e-163 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G089200.1 pacid=42762345 polypeptide=Potri.014G089200.1.p locus=Potri.014G089200 ID=Potri.014G089200.1.v4.1 annot-version=v4.1
ATGAGTTTACAAAGTGGAGATCTACCTGGACCGAATCAGCACGTGGAAACGAGCAATGAATCACGAAAGAAGCTAAAAATTTCATATACAAGAGAATTTC
TACTATCCTTGAGTGAATTGGATGTTTGCAAAAAATTACCAAGTGGATTTGATCAATCACTTCTAAGTGAACTCGGGGACACTTCACAGGATCGATATAG
AATTCCTGGCAGTGCATCATCACAAAGTTTTAGACGTAATGATTATAGCTCATCCCCACCCACTAGAGGGGATTCAAGTAATTTTTCTCGGGGTATTCAT
GGAAGGTGGGATAGCCGTTCCTCTGGAAGGAGTGACCGGGACAGTGACTCACAATCTGATTGGGATTCAGACGCTGGAAGGCGTTATGGCAACCAATCCC
GGCGATCTGGGCAAGTTCCTGAGCATGATGGACTTCTTGGAAGTGGTTCTTTTCCTAGACCGTCTGGATATGGTGCAGGGCTGTCAGCTCCAAAGTTTCG
ATCTAATGATCAATTCCAGCTCAATAAGAGTAATGAGCTGTATCAACCACCTCGTCCTTATAGGGCCATGCCTCATTTGCGTAGGGAAACTGACTCTCTT
AATGATGAAACATTTGGTTCTTCTGAATACACGAGTGACGATAGGGCAGAGGAGGAAAGAAAGAGAAGAGCTTCTTTTGAATCAATGAGGAAAGAACAAC
ATAAAGCTTTTCAAGAAAAGCAGAAACTGAATCCAGAAAAGTCTAAAGATGCATCTGATGTTACTGAGTTACTGGAGGACTCAAAAGATAATAAAAGACT
TCTGAATGGAAGCAATGAATTGGACAAGACAGTGATCCAGCCTATGCCAGTTAATGATCCTGATAAGCCTCTATACCCCTTACAAGCTCCTGTATCTAGA
CCTCTTGTGCCCCCAGGATTTTCAAGCGCCATAGTAGAGAAGCATGCTGGAGCAAAATCTTTAACCAATTCTGATCCCTCAGAGGTTGACATTGAACTTG
AGGGAAGCCTTTTGCAAAAAAAAGGTACTCATGTTTTAGATGAGACTTCAAATAATCAAGATGGAAAACAATTTTCGGAGGAAATGGATTTGAATGCGCA
GCATTCTAGAAGCCCAAGTGCTTGTGTTTCTGTTGATAACAAGAGCGAAAATATTCTGAATTTAGCAGCAGCTTTGGATGTTTCAAGTAAAAGAATTGGT
TCTAAGACTTCTAATCTTCCAGAAGCCTTTATAGATTCTGAGAACAGTGAAGCAATAGATCTTGGTGCTGAGAATGTGCCAGGGAATAAAAATGTGGGTG
AATCTGGATCCCATTCAACCTCAATTCTGGACAAGCTTTTTGGCAGTGCTTTAACACTAAATGGTACTGGTTCCTCCAGTTTCATCGAGCATCATGATGT
TAAAGCAGATGACCCACGGAGCCCTCAGACCGGTCAATCTTCCAAGTTTGCTCAGTGGTTTAGTGAAGAAGAAAAGAAACCTGTTGACAATCTCGCATCT
GGCAGGCCAAATGATTTGCTCTCACTAATTGTTGGTGGTGAAAAGGGTGGATCCCAGGTTAAAACTACTGATCACATGCTGCCAACCTTTCCCTTCCAAA
GCTTTGAACTTGCAGACAGGCATTTGACATCAAATCAAAAGTCTGTCAGCGTTGAAAATAATGAGGAATTGTCCATCACTGGTAAACTAGATGCAGCTCC
AGCTGTACTTACATGTGAAGACCTTGAACAATCTATTCTTTCAGAAATTACAGAAAATGGTTCGGCTTTGCCGCCACCTGTGTATGGCTGGGGAGGTGGT
GATGTTAAGGCTGAGCAGCAGAAAGCTGATGTTCATGCATCCCAGCACCTTCTTTCCTTGTTACAGAAGGGGACAGGCCTGAATAATTTAGCACCATCTG
CCAATCTAGGGATCAGTGCTACAGACAGACAACAAAATAGTGGGGTGGCAAATCCAAGCAAGGCAGCTCACAAGCCAAGACATGCAGATGCTGAAAACAT
TCCCAATTCAGGCAAGGCTTTGACACTTGAAACACTTTTTGGAACTGCTTTCATGAAGGAACTGCAATCAGTAGGAGCACCTATTTCCAGCCAAAGGGAC
TTGATTGGATATGCTAGAGATGATGCTTCAGAGTCTCATGGGTTACCCCTTCCTGTAATAGATGATGGTCTCCTTCCTCCAACAGTTGAAATTCCGTCGA
GCATGTCTAGTCATGGAAGTGGTGTCTTAGCATCAAAGCAAAGACAGCAAATTGTGTTGGATAGGACTGAAGAGCATTTGTTAGGCTTTGATCCTCAAAA
TAAAGTGGACTCTTCACATCTTCGAACTGAAATGAGCTCTAAGCTAGGTGGCTTTGATGGGTCTTATGAAATTCAACTTCCTGAAGAGGATAGCTTGATT
GCAGTCAGTGACCCTTTGAATCTCCGAAACTTTCTACTTGCTAGGAATTCAACTAAATCTGAGTTAATGCCGATTCCAGGGACATCAGTTGACATTGCTG
AGAAACTTGCAGCTTTGAATTCTGGATTCAGGGACGAAAGGCCTATTGTAGGTCACAAAGGTCCACCTTTTCTTCGTGGTCCTTATGATATGAGGGAGCC
TGATGTTCATTATCATAATCTCCATGTCCAGCCATCTTCTCCCCAGCTTCAGCCTCAGTTGAATCGTCCAGGGCCAATGTTCCATCCATTAGACTCTCAT
CCTGCTAATATGAATGCTCAGATGAAATTGGTGGCCCCAGAGAACATTCGCCATGATACTCCTAATCATCAATTCCCAGAAAATATGCTTCGTCCCCCTT
TCCATCACCCTAGCAGTGCACTGACTGGATTTGATCCTACTACGCGTGATTCTATGTTACATCAATTGCATATGCGTGGCAATTTTCCTTCTCCACTCCT
ACGACGTGAAATGCCCAGGGGTGCGATTCCGCTTCCACATCCCAACAATCAGGTGACTGGTTTTATGCAGGAATCAAGTCCAATGCAAGGTTTCCCTATT
GGTCAAAGGCAGCCCTACTTTGGTGCCCTTGGAATTCCACCTCAAGCTAACGATGGTGGTGGTGAAAGCAATCAACCGGAGGCACTCCAAAGGCTGATCG
AGATGGAACTCAGGTCAAACTCTAAGCAAATTCACCCCTTCGCCACTCCAGGCCATGGTCCAGGGATATATGGACACGAGTTAGACATGAGTTTTGGATA
TAGATAG
AA sequence
>Potri.014G089200.1 pacid=42762345 polypeptide=Potri.014G089200.1.p locus=Potri.014G089200 ID=Potri.014G089200.1.v4.1 annot-version=v4.1
MSLQSGDLPGPNQHVETSNESRKKLKISYTREFLLSLSELDVCKKLPSGFDQSLLSELGDTSQDRYRIPGSASSQSFRRNDYSSSPPTRGDSSNFSRGIH
GRWDSRSSGRSDRDSDSQSDWDSDAGRRYGNQSRRSGQVPEHDGLLGSGSFPRPSGYGAGLSAPKFRSNDQFQLNKSNELYQPPRPYRAMPHLRRETDSL
NDETFGSSEYTSDDRAEEERKRRASFESMRKEQHKAFQEKQKLNPEKSKDASDVTELLEDSKDNKRLLNGSNELDKTVIQPMPVNDPDKPLYPLQAPVSR
PLVPPGFSSAIVEKHAGAKSLTNSDPSEVDIELEGSLLQKKGTHVLDETSNNQDGKQFSEEMDLNAQHSRSPSACVSVDNKSENILNLAAALDVSSKRIG
SKTSNLPEAFIDSENSEAIDLGAENVPGNKNVGESGSHSTSILDKLFGSALTLNGTGSSSFIEHHDVKADDPRSPQTGQSSKFAQWFSEEEKKPVDNLAS
GRPNDLLSLIVGGEKGGSQVKTTDHMLPTFPFQSFELADRHLTSNQKSVSVENNEELSITGKLDAAPAVLTCEDLEQSILSEITENGSALPPPVYGWGGG
DVKAEQQKADVHASQHLLSLLQKGTGLNNLAPSANLGISATDRQQNSGVANPSKAAHKPRHADAENIPNSGKALTLETLFGTAFMKELQSVGAPISSQRD
LIGYARDDASESHGLPLPVIDDGLLPPTVEIPSSMSSHGSGVLASKQRQQIVLDRTEEHLLGFDPQNKVDSSHLRTEMSSKLGGFDGSYEIQLPEEDSLI
AVSDPLNLRNFLLARNSTKSELMPIPGTSVDIAEKLAALNSGFRDERPIVGHKGPPFLRGPYDMREPDVHYHNLHVQPSSPQLQPQLNRPGPMFHPLDSH
PANMNAQMKLVAPENIRHDTPNHQFPENMLRPPFHHPSSALTGFDPTTRDSMLHQLHMRGNFPSPLLRREMPRGAIPLPHPNNQVTGFMQESSPMQGFPI
GQRQPYFGALGIPPQANDGGGESNQPEALQRLIEMELRSNSKQIHPFATPGHGPGIYGHELDMSFGYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01290 unknown protein Potri.014G089200
[exp]
0 1
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Potri.018G072600
[exp]
3.31 0.8031
AT4G32010 B3 HSL1, HSI2-L1, ... VP1/ABI3-LIKE 2, HSI2-like 1 (... Potri.006G108300
[exp]
3.74 0.8013
AT5G47490 RGPR-related (.1) Potri.003G077100
[exp]
7.14 0.7692
AT4G39920 TFCC, POR TUBULIN-FOLDING COFACTOR C, PO... Potri.007G093800
[exp]
9.74 0.7490
AT1G21630 Calcium-binding EF hand family... Potri.005G102200
[exp]
10.24 0.7111
AT5G16280 Tetratricopeptide repeat (TPR)... Potri.016G068800
[exp]
10.39 0.7625
AT1G48760 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4... Potri.012G055000
[exp]
11.31 0.7329
AT3G02260 CRM1, TIR3, LPR... UMBRELLA 1, TRANSPORT INHIBITO... Potri.017G101100
[exp]
14.24 0.7434
AT3G22270 Topoisomerase II-associated pr... Potri.016G020600
[exp]
15.49 0.6560
AT3G05940 Protein of unknown function (D... Potri.005G000300
[exp]
15.81 0.7281

Potri.014G089200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.