Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01510 808 / 0 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68010 66 / 4e-11 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G12550 57 / 2e-08 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 50 / 2e-06 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT4G34200 50 / 4e-06 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 49 / 8e-06 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G72190 44 / 0.0003 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G163200 [exp] 984 / 0 AT1G01510 815 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G113250 [exp] 68 / 6e-12 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.004G175800 [exp] 66 / 4e-11 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.003G119000 [exp] 64 / 1e-10 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 62 / 5e-10 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 55 / 6e-08 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 55 / 8e-08 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G022800 [exp] 52 / 1e-06 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 50 / 4e-06 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007913 [exp] 910 / 0 AT1G01510 920 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036393 [exp] 873 / 0 AT1G01510 875 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014115 [exp] 70 / 3e-12 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10019793 [exp] 69 / 4e-12 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 64 / 1e-10 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 61 / 1e-09 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 59 / 3e-09 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 58 / 8e-09 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 52 / 5e-07 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10027868 [exp] 52 / 1e-06 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02826 [poplar] [flax] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G089400.1 pacid=42763545 polypeptide=Potri.014G089400.1.p locus=Potri.014G089400 ID=Potri.014G089400.1.v4.1 annot-version=v4.1 ATGAGCGCCACGACTACCAGATCTTTAGCGACAATGTCACACCGCCGTAACACTAACACTCCTCCTCCTCCACAGCAACAGCAACAGCAACAACAACAAC AACAACGTCTCCCTCTTGTTGTCACTCTCAACTGCATCGAAGATTTTGCCATCGAACAAGACTCCTTATCCGGCGTCGCTTTAATTGAACACGTCCCTCT CGGCCGCCTCTCCGATGGCAAGATCGAATCTGCCGCTGCCGTCCTCCTCCATTCACTCGCTTACCTCCCACGCGCCGCCCAACGCCGTCTCCGTCCTTAC CAGCTCATCCTATGCCTGGGGTCGGCTGACCGAGCTGTCGACTCCGCTCTCGCTGCCGATTTAGGTCTCCGGCTTGTACACGTGGATACTTCTCGAGCCG AGGAGATCGCTGATACGGTTATGGCTTTGTTTCTAGGCTTGCTGCGCCGGACGCATTTGTTGTCAAGACATGCCTTATCAGCTTCCGGTTGGCTTGGCTC GCTGCAGCCGCTTTGTAGAGGAATGAGGAGGTGTAGAGGTTTGGTATTGGGCATTGTTGGTAGATCTGCATCAGCTAGATCTTTGGCTACTAGAAGCTTA GCTTTTAAAATGAGTGTGCTGTATTTTGATGTACACGAGGGGCCAGGAAAATTAACCAGGTCTTCTATTACATTTCCTTTAGCTGCTCGAAGAATGGATA CTCTTAATGATTTACTGGCTGCAAGTGATCTTATTTCACTTCACTGTGCTTTAACTAATGAAACTGTTCAGATTATCAATGAAGAGTGCTTGCAACATAT AAAGCCAGGGGCATTTCTTGTGAATACGGGCAGCAGTCAGCTGCTGGATGATTGTGCTTTGAAGCAACTTCTGATTGATGGGACCTTGGCCGGTTGTGCC CTGGATGGTGCTGAAGGGCCACAGTGGATGGAAGCATGGGTAAAAGAGATGCCCAATGTATTGATACTTCCACGCAGTGCAGATTACAGTGAAGAAGTGT GGATGGAGATAAGGGAAAAAGCTATCTCTATTCTGCAGTCATTCTTCTTTGATGGGATCGTACCAAAGAATGCTGTTTCTGATGAGGAAGGGGAAGAAAG TGAAATAGGTGATGAAAGTGAACAATTTCACAGGCAAGACAAAGAAAGTACTCTGCAGGATTCTGTTGGTGAGCAATTGACCGATGATATTCAGCTAACT CCAGAAACCTCTCGCAAAAAAGTCAGTGGTCAATCAATAGAATCTACCAGCCAAGCTCAGGGTTCTGGCATGTCTCAAAATACAACCACAAGATCTGATG AAAGACGCAGCCGATCAGGCAAGAAGGCAAAAAAAAGACATGGCCGTCAAAAACCTCGACAGAAATCAGACAATCCTTCTCAATTAGAGAAAGAAAGTAC TTCACATCAAGAAGATGATACTGCTATGAGTGGCAGTGATCAAGTCTCCAGTTCTCGGTTTGCTTCCCCTGAAGACTCAAGGAGTAGGAAAACACCAATA GAATTAATGCAAGAATCAAGTTCAGGCCAGCTTTCAAGATCAGGCAAGAGGCTCAGTGGAAAGTCTGATGAGCTGCTCAAAGATGGGCACATTATAGCTT TATATGCAAGAGATCGCCCTGCACTCCATGTTTCCAGGCAAAGAGCTAAAGGAGGTGGTTGGTTCCTGGATGCTCTGTCAAATGTAACAAAAAGAGATCC TGCAGCCCAGTTCCTTGTTGTTTTCAGAAACAAGGACACAATTGGGTTGCGCTCTTTTGCTGCTGGTGGAAAGTTATTGCAGATTAACAGGAGAATGGAA TTTGTTTTCACCAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGATGAATGCAGGCTGGTTAACTGTAGAAATCCTTTGGCTA TTTTGGATGCACGTGTCGAGATTCTGGCCGCCATAGCGGAAGATGATGGTGTTACTCGTTGGCTAGATTAG
AA sequence Show only first row Show all	>Potri.014G089400.1 pacid=42763545 polypeptide=Potri.014G089400.1.p locus=Potri.014G089400 ID=Potri.014G089400.1.v4.1 annot-version=v4.1 MSATTTRSLATMSHRRNTNTPPPPQQQQQQQQQQQRLPLVVTLNCIEDFAIEQDSLSGVALIEHVPLGRLSDGKIESAAAVLLHSLAYLPRAAQRRLRPY QLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSRHALSASGWLGSLQPLCRGMRRCRGLVLGIVGRSASARSLATRSL AFKMSVLYFDVHEGPGKLTRSSITFPLAARRMDTLNDLLAASDLISLHCALTNETVQIINEECLQHIKPGAFLVNTGSSQLLDDCALKQLLIDGTLAGCA LDGAEGPQWMEAWVKEMPNVLILPRSADYSEEVWMEIREKAISILQSFFFDGIVPKNAVSDEEGEESEIGDESEQFHRQDKESTLQDSVGEQLTDDIQLT PETSRKKVSGQSIESTSQAQGSGMSQNTTTRSDERRSRSGKKAKKRHGRQKPRQKSDNPSQLEKESTSHQEDDTAMSGSDQVSSSRFASPEDSRSRKTPI ELMQESSSGQLSRSGKRLSGKSDELLKDGHIIALYARDRPALHVSRQRAKGGGWFLDALSNVTKRDPAAQFLVVFRNKDTIGLRSFAAGGKLLQINRRME FVFTSHSFDVWESWMLEGSLDECRLVNCRNPLAILDARVEILAAIAEDDGVTRWLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	0	1
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Potri.003G109100 [exp]	4.47	0.9063
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	4.69	0.9287
AT1G27210			ARM repeat superfamily protein...		Potri.008G192100 [exp]	10.19	0.8651
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	11.04	0.9206
AT5G18500			Protein kinase superfamily pro...		Potri.008G214200 [exp]	11.13	0.8592
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	11.18	0.8769
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	13.85	0.8854	Pt-I.1
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	14.96	0.8747
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.003G022900 [exp]	15.29	0.8999	XYL4.3
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Potri.008G139900 [exp]	15.58	0.8505

Compare expression of checked genes

Potri.014G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.