Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 115 / 8e-33 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 62 / 1e-12 Copper transport protein family (.1) AT5G23760 56 / 1e-10 Copper transport protein family (.1) AT1G63950 50 / 4e-08 Heavy metal transport/detoxification superfamily protein (.1) AT5G52750 49 / 9e-08 Heavy metal transport/detoxification superfamily protein (.1) AT5G26690 47 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G05920 45 / 3e-06 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 44 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 44 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 42 / 0.0001 Heavy metal transport/detoxification superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G163400 [exp] 120 / 1e-34 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 107 / 5e-30 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 105 / 2e-29 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 99 / 1e-26 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 96 / 1e-25 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 88 / 1e-22 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 82 / 2e-20 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G145516 [exp] 73 / 8e-17 AT1G01490 56 / 7e-11 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147300 [exp] 67 / 1e-14 AT1G01490 87 / 2e-22 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036395 [exp] 114 / 7e-32 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 112 / 4e-31 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 99 / 3e-26 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 90 / 2e-21 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 85 / 3e-21 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 86 / 3e-20 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 82 / 3e-20 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 80 / 2e-19 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039285 [exp] 76 / 2e-17 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10024672 [exp] 66 / 4e-14 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.014G089700.1 pacid=42763239 polypeptide=Potri.014G089700.1.p locus=Potri.014G089700 ID=Potri.014G089700.1.v4.1 annot-version=v4.1 ATGAAGAAGTTTGTGTTGAAGGTGGACTTGCACGATGACAAAGCCAAGCAAAAGGCTATGAAGACAGTCTCTACTCTTACAGGAATTGATTCCATGGCCA TCGACATGAAGGAAAAGAAATTAACCGTGATCGGAACGGTTGATCCTGTAAATGCAGTCAGCAAACTGAGAAAATATTGGCCAGCAGACATTATCACAGT AGGGCCAGCAAAAGAGCCTGAGAAGAAAGAGGAGGCTAAGAAGGAGGAACCCAAGAAAGAGGAGGCAAAGAAAGAAGAACCTAAGAAGGAAGAAGCGAAG CCAGAGGAAGCCAAGAAGGAAGAACCCAAAAAAGAGGAGGAGAAGAAGGGGGAAGAGAAGAAGGAGGAGAAGAAGGGGGAAGAGAAGGGGGAAGAGAAGA AGGAGGAAGAGAAGAAGAAAGAGCAAGCACCACCGCCAGACCCAGTTATGGAGCTTGTCAAGGCCTACAGAGCTTACAATCCTCAAATGACCACATATTA CTATGTCCAGAGCATGGAAGAGAATCCAAATGCATGTGTAATTTGTTGA
AA sequence Show only first row Show all	>Potri.014G089700.1 pacid=42763239 polypeptide=Potri.014G089700.1.p locus=Potri.014G089700 ID=Potri.014G089700.1.v4.1 annot-version=v4.1 MKKFVLKVDLHDDKAKQKAMKTVSTLTGIDSMAIDMKEKKLTVIGTVDPVNAVSKLRKYWPADIITVGPAKEPEKKEEAKKEEPKKEEAKKEEPKKEEAK PEEAKKEEPKKEEEKKGEEKKEEKKGEEKGEEKKEEEKKKEQAPPPDPVMELVKAYRAYNPQMTTYYYVQSMEENPNACVIC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01490			Heavy metal transport/detoxifi...		Potri.014G089700 [exp]	0	1
AT5G59790			Domain of unknown function (DU...		Potri.009G027500 [exp]	3.00	0.8327
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.006G152700 [exp]	3.46	0.8329
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	3.46	0.7604
AT1G70750			Protein of unknown function, D...		Potri.010G109900 [exp]	3.87	0.7943
AT5G42710			unknown protein		Potri.002G261700 [exp]	5.91	0.8368
AT3G08670			unknown protein		Potri.016G139500 [exp]	7.48	0.7959
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	9.00	0.6864
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.010G221700 [exp]	9.53	0.7571
AT5G51670			Protein of unknown function (D...		Potri.012G129900 [exp]	10.39	0.7915
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	13.26	0.7758

Compare expression of checked genes

Potri.014G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.