Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01270 382 / 4e-127 RING/U-box superfamily protein (.1) AT4G01245 69 / 4e-14 unknown protein AT5G41440 47 / 2e-06 RING/U-box superfamily protein (.1) AT4G12210 46 / 2e-05 RING/U-box superfamily protein (.1) AT4G11360 45 / 2e-05 RHA1B RING-H2 finger A1B (.1) AT3G43430 45 / 3e-05 RING/U-box superfamily protein (.1) AT1G57730 45 / 4e-05 RING/U-box superfamily protein (.1) AT4G27470 45 / 6e-05 ATRMA3 RING membrane-anchor 3 (.1) AT4G11370 44 / 9e-05 RHA1A RING-H2 finger A1A (.1) AT3G58720 44 / 0.0002 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G164000 [exp] 300 / 2e-97 AT4G01270 121 / 2e-30 RING/U-box superfamily protein (.1) Potri.010G245801 [exp] 50 / 6e-07 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 47 / 5e-06 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.011G119900 [exp] 44 / 4e-05 AT1G14200 60 / 9e-12 RING/U-box superfamily protein (.1) Potri.010G133200 [exp] 43 / 6e-05 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133300 [exp] 43 / 6e-05 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.001G400600 [exp] 43 / 8e-05 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.001G101000 [exp] 42 / 0.0002 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.014G139400 [exp] 43 / 0.0003 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005127 [exp] 500 / 2e-172 AT4G01270 352 / 1e-115 RING/U-box superfamily protein (.1) Lus10018817 [exp] 500 / 3e-172 AT4G01270 360 / 2e-118 RING/U-box superfamily protein (.1) Lus10005126 [exp] 290 / 7e-93 AT4G01270 179 / 1e-51 RING/U-box superfamily protein (.1) Lus10017510 [exp] 47 / 1e-05 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 44 / 7e-05 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10036404 [exp] 43 / 0.0001 AT3G61550 149 / 2e-46 RING/U-box superfamily protein (.1) Lus10029292 [exp] 44 / 0.0002 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10024405 [exp] 43 / 0.0002 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10008283 [exp] 43 / 0.0002 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 43 / 0.0002 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G089800.4 pacid=42764014 polypeptide=Potri.014G089800.4.p locus=Potri.014G089800 ID=Potri.014G089800.4.v4.1 annot-version=v4.1 ATGGTCACAAACCCTAACAACTCTTTCGCGAAGACAATCTGCTCCATCTGCTATGAAGATCTCAAGCCCATTGTCGAAGATCTCCAATCAATCTCCATTT GTGGCCACGTCTTTCACGAACTCTGCCTGCAGCAGTGGTTTGAATATTGTTCGAATGAAAAGAAGCGTAGCTGTCCAGTTTGCAAGCAGAATTGCTCGGC GCAAAATGCCGGTCGCCTTTATTTTCAGTCGGTCGGGGACCAAACCGAACCGTTCGGGGATCGGAAGGCGGGGGAGTGTGAGGAGGATCCTAAGTTGTTG CGTGGAGAAGTGAAGAGATTGGAAGGAAAATTGTCGGGTCTCAATACCATTTTGGAGAGTCAAGTGAAGGAAATGAAGCATCTCAATGAGGAATTGTATC TTTGTAAAGATGAGTTGAAGAAAGAAGTTAAATTGAGGACTCATGCAATGGAACAAAAAGCATCGATTCAGCACCTGCTTCGATCGAAATCTGAGGAGCT TGATGCACTGAAGTTGGAGCGCATCAGGCTGCAAGATAGGAATATGGCACTTGCCAAAGAGCTTGTAGCACTCAAGCTGGTATCGGATGTGAATCTGGAG GAAGATGAGGTTTTAAAGCTTGCCTCTTTTGGTAACGAAGCCAATAACAAAGATACCGTAGACATCCTGAGAAAGTCTTTGGTCATTCGCAATAAGACTT ACAAAGAATTGATGGCTAAGTGTAACCAACTTGGACAGGGTGAGGCTCGTTCTTGTAAAAGACTTGAGAAGGCAAAAGAAAAGATCAATAAATTAAAGAC AAGGGTCAAAGAACTAGAGATGGTTGTTGAAGTAAAAGATAACGAAAGTTTGAGGGCTTTAAAAGCTTCAAAGAAGGCAAATTGCAAAGGGCTTGTTGCA GAAGATATCAAGGACAGTTCTAATGCTTTGGCCACAAGTACTTCATGTGCTGGTCAAAAGGAACAGCATTGTGTATCTGTGGATCTAACAGGAAGCTCGA CCAGTGATCGAGAAAATTTTAGTTTCATGGGTGATAAGGGTGCCAATTCATCCAAAGAATGTACTAGAATCACTGCTCTTAACAAACAGGGAAATGCTTA TTATGCAAGAGATGAAGCAGCTTTGAATCTTCCTACAGCTGTGCATGTAACTCTAGACCCTGATTCAAAACATCAGACCAGAGAGGGTGAATCTGCTCTT GCAAAGTCAGAAGCAGTTTCTGATATTCACAGTGAAGCCAAAGTGCACAAAACAGTGAACCCATCTGGACCTTTTGGCATAAGAATCAACAATGGTAAGG GCAATGCTCTTGATTCTGCTACAGACGAGGAAGTTATTGTGTCTCTTGATGACACCAGAGAAGGGGATATATGTTTCTCTAGTGGATTGATGGGTCCTGA TGGAACAAACCGGTACTTGGGGAGATGGTGTAAGCGTGGTCAAAGCAACGGGTCATTGGCCATGCAAGGTACAAGTGCAAGTAGCAGGGATTTAATTGCT GTTGGATCTGATGGGCGAGGTGGTAGAGTTAAAGTGCTGAGATCTATGAATCAATCCTTGTTGGATGGCAAGGAAAATTCTGTATCTGCCAAGAAGTGCA AGTATGGAGCTAAAACAAGCAGTTTGCAATCTCAAGGCTGTTTACAGATAGAACACTTCTTTGGGAGGGCCAGTCAGTAA
AA sequence Show only first row Show all	>Potri.014G089800.4 pacid=42764014 polypeptide=Potri.014G089800.4.p locus=Potri.014G089800 ID=Potri.014G089800.4.v4.1 annot-version=v4.1 MVTNPNNSFAKTICSICYEDLKPIVEDLQSISICGHVFHELCLQQWFEYCSNEKKRSCPVCKQNCSAQNAGRLYFQSVGDQTEPFGDRKAGECEEDPKLL RGEVKRLEGKLSGLNTILESQVKEMKHLNEELYLCKDELKKEVKLRTHAMEQKASIQHLLRSKSEELDALKLERIRLQDRNMALAKELVALKLVSDVNLE EDEVLKLASFGNEANNKDTVDILRKSLVIRNKTYKELMAKCNQLGQGEARSCKRLEKAKEKINKLKTRVKELEMVVEVKDNESLRALKASKKANCKGLVA EDIKDSSNALATSTSCAGQKEQHCVSVDLTGSSTSDRENFSFMGDKGANSSKECTRITALNKQGNAYYARDEAALNLPTAVHVTLDPDSKHQTREGESAL AKSEAVSDIHSEAKVHKTVNPSGPFGIRINNGKGNALDSATDEEVIVSLDDTREGDICFSSGLMGPDGTNRYLGRWCKRGQSNGSLAMQGTSASSRDLIA VGSDGRGGRVKVLRSMNQSLLDGKENSVSAKKCKYGAKTSSLQSQGCLQIEHFFGRASQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	0	1
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Potri.014G189600 [exp]	1.00	0.8711	BRCA2.1
AT5G04320			Shugoshin C terminus (.1.2)		Potri.010G229100 [exp]	4.24	0.7603
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G066600 [exp]	8.36	0.7805	CHR927
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	9.89	0.7906
AT1G26330			DNA binding (.1.2)		Potri.008G097700 [exp]	10.95	0.8138
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	14.28	0.8183
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.010G160350 [exp]	20.85	0.6938
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	24.97	0.7431	MYB222
AT4G24710			P-loop containing nucleoside t...		Potri.015G084900 [exp]	32.40	0.7335
AT2G37960			unknown protein		Potri.006G094600 [exp]	33.34	0.8007

Compare expression of checked genes

Potri.014G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.