Plant FIBer expression Database

Potri.014G089900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G090000
[exp]
96 / 1e-26 ND /
Potri.010G231600
[exp]
39 / 0.0003 AT5G02420 44 / 1e-06 unknown protein
Potri.008G029600
[exp]
38 / 0.0003 AT5G02420 48 / 5e-08 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G089900.1 pacid=42764482 polypeptide=Potri.014G089900.1.p locus=Potri.014G089900 ID=Potri.014G089900.1.v4.1 annot-version=v4.1
ATGATTTCAACCGATCTTGAAGTTCCTGGACTGGAAGGAAAGACCCTAAAACTAACCATCAATCCTGTTGAAACAAGCGAAGCAGCAAACACCACCTGGG
ATTGCAAGACCCCAACTGGAGAGGAACACAAAATACCTATCCAGCACGAGTGCCCTCCAGCTCCAGGTCCAAAGTGGCTTCTGGATTCTCTCTGTGTGAA
GAAGAAGGCGTCGAAGAAGAAGTCTAGGTGCCAGCCAAAGGTAATAATGTTGCAACCTTTTAACGTATCTTATTCCAAGCGAATCACTCTGGCGCCTGGG
ATGCTGCCTGAGGATGTTAGAGCTTCTGATGATGCCTTAGAGGATCACATTGTAAGAAATTTGAAGTGGCCAGTCGAAGAGATGAGAAGACTGCAATATC
GTTCACCAAGAGAAAAGAAACACAGGGTATAA
AA sequence
>Potri.014G089900.1 pacid=42764482 polypeptide=Potri.014G089900.1.p locus=Potri.014G089900 ID=Potri.014G089900.1.v4.1 annot-version=v4.1
MISTDLEVPGLEGKTLKLTINPVETSEAANTTWDCKTPTGEEHKIPIQHECPPAPGPKWLLDSLCVKKKASKKKSRCQPKVIMLQPFNVSYSKRITLAPG
MLPEDVRASDDALEDHIVRNLKWPVEEMRRLQYRSPREKKHRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G089900
[exp]
0 1
AT2G41710 AP2_ERF Integrase-type DNA-binding sup... Potri.016G056400
[exp]
12.20 0.8959
AT1G50060 CAP (Cysteine-rich secretory p... Potri.009G083600
[exp]
22.78 0.8856
AT5G47540 Mo25 family protein (.1) Potri.003G055900
[exp]
26.68 0.8830
Potri.011G044012
[exp]
28.01 0.8823
AT4G09190 F-box and associated interacti... Potri.005G254633
[exp]
32.77 0.8817
AT4G16265 NRPE9B, NRPD9B,... RNA polymerases M/15 Kd subuni... Potri.010G142500
[exp]
38.67 0.8813
AT1G77450 NAC ANAC032 NAC domain containing protein ... Potri.001G220500
[exp]
42.30 0.8805
Potri.002G020750
[exp]
43.74 0.8801
Potri.002G099150
[exp]
47.24 0.8801
AT1G74875 unknown protein Potri.013G008800
[exp]
49.30 0.8795

Potri.014G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.