Plant FIBer expression Database

Potri.014G090100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12370 1287 / 0 SEC10 exocyst complex component sec10 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G164100
[exp]
1478 / 0 AT5G12370 1301 / 0.0 exocyst complex component sec10 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007908
[exp]
1379 / 0 AT5G12370 1330 / 0.0 exocyst complex component sec10 (.1.2.3)
Lus10036398
[exp]
1325 / 0 AT5G12370 1255 / 0.0 exocyst complex component sec10 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0294 Sec10 PF07393 Sec10 Exocyst complex component Sec10
Representative CDS sequence
>Potri.014G090100.4 pacid=42764543 polypeptide=Potri.014G090100.4.p locus=Potri.014G090100 ID=Potri.014G090100.4.v4.1 annot-version=v4.1
ATGAAACAGAGCAGAGATGGAATCTGGAGTGATAGAAATTCAAAATCTTCATCAGTTGCCTCCGTTCCCCTCATTCTCGATATAGATGATTTTAAGGGTG
ATTTTTCATTTGATGCGTTATTTGGCAACCTGGTAAATGATCTGCTCCCATCTTTCCAAGATGAAGAAGCAGATTCAGCTGAAGGTAATATAGGTGGGAG
TGATATGTTAGCAAATGGGGATGTAAGAGCCCCATCTGACGCAGCAAAATTGGCGCAAGGGTTGTCTTCTCCCTTATTTCCTGAAGTGGATAGTCTTTTG
TCTTTGTTTAGGGATTCTTGTACGGAGTTGATAGACCTCCGAAAACAGATTGATGGAAGGCTCTACAATCTCAAGAAGGAGGTTTCTGTCCAAGATTCTA
AGCACCGTAAAACACTTGCTGAGCTGGAACAGGGTGTAGATGGCTTGTTTGATAGTTTCGCTAGGCTTGACTCACGTATTTCAAGTGTTGGACAGACTGC
TGCCAAAATAGGAGACCATTTGCAGAGTGCAGATGCTCAAAGGGAAACTGCTAGTCTAACAATAGAACTCATAAAGTATTTGATGGAATTCAATGGCAGC
CCAGGTGACCTAATGGAACTTTCACCTCTGTTTTCAGATGACAGCCGTGTTGCTGAGGCTGCTTCAATTGCACAGAAATTACGGTCATTTGCTGAGGAAG
ATCTTGGAAGACAAGGCTTATCCGTACCATCTGTTATGGGAAATGCAACCGCAAGCAGAGGATTAGAAGTTGCAGTTGCTAATCTTCAGGATTACTGCAA
CGAACTGGAGAATAGATTGTTGGCTCGGTTTGATGCAGCATCACAGAAAAGAGAATTATCGACCATGGCAGAATGTGCTAAAATTTTATCTCAGTTCAAC
AGGGGCACAAGTGCCATGCAACATTACGTGGCAACACGTCCAATGTTCATTGATGTGGAAGTCATGAATGCAGACACTAGATTGGTTCTTGGTGATCACG
GTTCTCATGCTAGTCCAAGCAATGTTGCTCGTGGACTTTCTTCCTTGTTCAAAGAAATCACAGACACTGTCCGTAAAGAAGCTGCTACTATTATGGCAGT
ATTCCCTTCTCCTAATGATGTCATGTCAATTTTAGTTCAGAGAGTTTTAGAGCAGCGAGTTACAGCTCTTTTGGATAAATTGTTAGTGAAACCATCTCTT
GTGAATTTACCTCCCATGGAAGAAGGTGGACTTTTATTGTATCTTAGAATGCTAGCAGTGGCATATGAGAAGACTCAGGAACTGGCTAGAGATCTACGAG
CCATGGGATGTGGTGACTTAGATGTTGAGGGCCTCACAGAGTCTCTGTTCTCTTCCCACAAGGATGAATATCCTGAACATGAGCAGGCCTCTCTTAGACA
GCTATATCAAGCAAAGATGGAAGAACTGCATGCTGAGAGCCAGCATCTTTCTGAATCAACTGGGACTATTGGGCGCTCAAAAGGGGCTTCTGTAGCATCT
TCCCACCAGCAGATATCTGTAACAGTTGTGACAGAATTTGTGCGGTGGAATGAGGAAGCAATATCAAGATGTGCTTTGTTTTCATCTCTGCCTGCTACGC
TTGCAGCCAATGTGAAAGCAGTGTTCACTTGCTTGCTAGATCAAGTAGGGCAATATATAACAGAAGGTCTTGAACGGGCTAGAGATGGCCTCACTGAAGC
TGCAGCTCTAAGGGAACGATTTGTGCTGGGAACGAGTGTTAGTAGAAGGGTTGCTGCTGCAGCTGCCTCTGCTGCAGAAGCTGCTGCTGCTGCTGGTGAG
AGCAGTTTCAGATCTTTCATGGTTGCTGTACAACGTTGTGGAAGTAGTGTGGCTATAGTGCAGCAGTATTTTGCAAATTCCATATCTCGCCTCTTACTAC
CTGTGGATGGTGCACATGCTGCTTCATGTGAAGAAATGGCAACAGCCATGTCCAGTGCAGAGGCTGCAGCTTATAAGGGGCTTCAACAATGCATTGAAAC
TGTTATGGCTGAGGTAGAGCGATTGCTATCAGCTGAACAAAAGGCAACAGATTATCGGTCACCTGATGATGGAATGGCTCCTGATCATCGTCCAACAAAT
GCCTGCACAAGGGTTGTGGCATATCTTGCACGTGTGCTCGAGGCTGCATTCACTGCATTGGAAGGTCTTAACAAGCAAGCATTCCTGACTGAATTGGGAA
TTCGCTTGCACAAGGGGCTGCTTAATCATTGGCAGAAATTCACTTTTAATCCCAGTGGAGGATTGCGGTTGAAACGTGATATAACTGAGTATGGAGAATT
TGTGCGTAGTTTTAATGCTCCTTCTGTTGATGAGAAGTTTGAGTTGTTGGGCATAATGGCCAATGTCTTCATTGTTGCTCCTGAAAGCCTTTCCACTTTG
TTTGAGGGTACCCCCAGTATACGCAAAGATGCACAAAGGTTTATTCAGCTTAGAGAGGACTACAAGAGTGCTAAACTTGCATCAAGACTTAGTTCCTTGT
GGACAAGCTCTAGTTGA
AA sequence
>Potri.014G090100.4 pacid=42764543 polypeptide=Potri.014G090100.4.p locus=Potri.014G090100 ID=Potri.014G090100.4.v4.1 annot-version=v4.1
MKQSRDGIWSDRNSKSSSVASVPLILDIDDFKGDFSFDALFGNLVNDLLPSFQDEEADSAEGNIGGSDMLANGDVRAPSDAAKLAQGLSSPLFPEVDSLL
SLFRDSCTELIDLRKQIDGRLYNLKKEVSVQDSKHRKTLAELEQGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRETASLTIELIKYLMEFNGS
PGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDLGRQGLSVPSVMGNATASRGLEVAVANLQDYCNELENRLLARFDAASQKRELSTMAECAKILSQFN
RGTSAMQHYVATRPMFIDVEVMNADTRLVLGDHGSHASPSNVARGLSSLFKEITDTVRKEAATIMAVFPSPNDVMSILVQRVLEQRVTALLDKLLVKPSL
VNLPPMEEGGLLLYLRMLAVAYEKTQELARDLRAMGCGDLDVEGLTESLFSSHKDEYPEHEQASLRQLYQAKMEELHAESQHLSESTGTIGRSKGASVAS
SHQQISVTVVTEFVRWNEEAISRCALFSSLPATLAANVKAVFTCLLDQVGQYITEGLERARDGLTEAAALRERFVLGTSVSRRVAAAAASAAEAAAAAGE
SSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKATDYRSPDDGMAPDHRPTN
ACTRVVAYLARVLEAAFTALEGLNKQAFLTELGIRLHKGLLNHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMANVFIVAPESLSTL
FEGTPSIRKDAQRFIQLREDYKSAKLASRLSSLWTSSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12370 SEC10 exocyst complex component sec1... Potri.014G090100
[exp]
0 1
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Potri.003G015300
[exp]
2.82 0.9491
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.009G067100
[exp]
6.78 0.9420
AT3G01640 ATGLCAK ARABIDOPSIS THALIANA GLUCURONO... Potri.001G343400
[exp]
9.53 0.9271
AT1G68370 ARG1 ALTERED RESPONSE TO GRAVITY 1,... Potri.008G123200
[exp]
9.94 0.8910
AT1G21170 SEC5B Exocyst complex component SEC5... Potri.002G068900
[exp]
14.49 0.9085 Pt-SEC5.2
AT5G11960 Protein of unknown function (D... Potri.018G060500
[exp]
15.96 0.9310
AT4G24840 unknown protein Potri.015G094000
[exp]
16.06 0.9275
AT5G49460 ACLB-2 ATP citrate lyase subunit B 2 ... Potri.008G105300
[exp]
17.29 0.9216 ACLB.2
AT5G05010 clathrin adaptor complexes med... Potri.012G125500
[exp]
19.18 0.9322
AT3G29360 UGD2 UDP-glucose dehydrogenase 2, U... Potri.008G094300
[exp]
20.17 0.9232

Potri.014G090100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.