Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28460 637 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61520 637 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28370 610 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 274 / 2e-82 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 274 / 6e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 262 / 2e-76 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12300 259 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 262 / 3e-76 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 256 / 5e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 258 / 6e-76 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 280 / 2e-84 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G105600 [exp] 277 / 6e-82 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 270 / 7e-80 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 268 / 2e-78 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G074500 [exp] 262 / 7e-78 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 266 / 1e-77 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G069600 [exp] 264 / 3e-77 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 263 / 3e-77 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 259 / 2e-76 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040633 [exp] 810 / 0 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 273 / 1e-81 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036020 [exp] 274 / 5e-80 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 266 / 1e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014244 [exp] 261 / 2e-77 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10023863 [exp] 260 / 3e-75 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027914 [exp] 258 / 9e-75 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 261 / 3e-74 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 253 / 2e-73 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000364 [exp] 251 / 2e-72 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G090400.1 pacid=42763758 polypeptide=Potri.014G090400.1.p locus=Potri.014G090400 ID=Potri.014G090400.1.v4.1 annot-version=v4.1 ATGAGCACCATAACAGTTTCAGCATCAAAGCACTCAAACATCCTCCGCCTCCTCACATCCCACACTTTCCTCCGCCGCCTTTCCACCGAACCTCCAGAAC CACAACCACCGCCACAACCAAAAACTAGCAACCATAACTCAATCATAACCGAAGCCCTACAACTCCTTCAAATACCAGGAAATGAATGGAACACCACTCA ACTCAATCAACTCCTCTTCACCGACTCCCCTCCTTCCTCCTCTTCTCCTCGCCTTTTCTATCAAATCACCCGCCGCTTACCTTCCTCTTCTCAAGCCCTC AAGTTCCTCAATTACCTCCAAAATAACTCCCCTTCTTCACCAGACACCCAATCTCTACTCTCCTATACTTTCCAGGCCATTTTCGAGCTCGCTTTTTGTG AACCCGATTCAAATGCTAACCTATCCCGGCTTTACAAAACCTCGAAAGAGTTGAATATTCCTCTCACCGTCAATGCTGCGTCGTTTCTCCTTCGCGCCTC TGGAAGGAGTGAGTTGGTGGAGGAATCTCTCATTCTCTTCAATGATCTTGACCCATCTGTTAAAAACACCTATCTTCGTAATGTTTGGCTCAGTATTTTG TTGAGGTCCGGGCGTGTTAAAGATGCATTGAAGGTGATCGATGAAATGTTTGAGTCAAATGACGACTCTAATTGTCGTCCCAACGATGCTACAGGGGATA TTCTGTTTTCGTTTTTGTTGAAGAGAGAAAGAAATGAAGAACTTTTGAGTGAAGATGAGATTGTTAATCTGGTGTTGAAGTTCGGCGAGCATGGGGTTCT TATTAGTTCGTTTTGGATGGGTCGATTGATTACCAGGCTGTGTCGGAATCGGAAGACTAATAGAGGTTGGGATCTTTTTACTGAAATGATAAAACTAGGG GCTGTTTTGGAATCTGCTGCTTGCAATTCATTATTGACAGGATTAGCAAGAGAGGGCAATTTTAATAGAATGAATGAACTAATGGAAAAGATGGTGGAAA TGGATATTCAGCCGAATGTTGTTACTTTTGGGATTCTTATTAATCATATGTGCAAGTTTAGGAGAGTCGATGATGCGTTGGAGGTTCTTGAAAAGATGAG TGGTGGTAAAGAGAGTGGTGGCATAAGTGTTTCGGTTGAACCGGATGTTGTTATTTATAATACGTTGATTGATGGACTTTGTAAAGTTGGAAGGCAACAA GAAGGATTGGGTTTGATGGAAAGAATGAGATCACAGAAGGGGTGCGCTCCTGATACCATTACATACAATTGCTTGATCGATGGGTTTTGTAAAGCTGGTG AGATAGAGAAGGGAAAGGAGCTGTTTGATGAGATGAATAAAGAGGGTGTTGCACCAAATGTCGTCACGGTTAATACTTTGGTTGGTGGCATGTGTAGAAC TGGGAGAGTCAGTAGTGCAGTTAACTTCTTTGTTGAGGCGCAAAGGAGAGGTATGAAAGGTGATGCTGTTACGTATACAGCTTTGATCAATGCTTTCTGT AATGTGAACAATTTTGAGAAGGCAATGGAACTCTTCAATGAAATGTTGAAAAGTGGATGCTCTCCAGATGCAATTGTCTACTACACCTTGATCTCTGGTT TTAGCCAAGCTGGAAGGATGGCTGATGCCAGTTTTGTCTTGGCAGAGTTGAAAAAGCTTGGGATCCGCCCTGATACAGTGTGCTATAATACTTTGATTGG TGGGTTTTGTAGGACGAACAAGTTTCATAGAGTTTTTGAGATGCTCAAGGAAATGGAGGAAGCTGGATTGAAACCCGATACTATCACATATAACACTTTG ATTGCTTATGCCAGCAAAAATGGGGATTTAAAGTTTGCTCAGAAAGTGATGAGAAAGATGATCAAGGCCGGTGTGGTGCCCACTGTTGCTACATATGGTG CTGTAATAAATGCATATTGCTTAAATGGAAATGGAAATGAAGCCATGGAGATTTTCAAAGACATGAAAGCTGCATCGAAGGTTCCACCAAACACTGTGAT ATACAACATCCTAATCAACTCTTTGTGCAAGAATAATAAAGTGAAATCTGCTGTTTCCTTGATGGAAGATATGAAAATTTGGGGGGTGACGCCAAATACC ACCACATACAATGCTATATTCAAAGGCCTTAGAGACGAGAAAGATTTGGAAAAAGTCTTTGAATTCATGGATAGAATGATCGAGCATGCTTGTAATCCTG ATTATATAACCATGGAGATCCTCACAGAGTGGCTCTCTGCAGTTGGTGAAATAGAGAGGTTGAAAAAATTTGTTGCGGGATGTGAGGTTTCTAGTTCCAC TGCACAAAAGGCTTCTTCTAGGTCGTGA
AA sequence Show only first row Show all	>Potri.014G090400.1 pacid=42763758 polypeptide=Potri.014G090400.1.p locus=Potri.014G090400 ID=Potri.014G090400.1.v4.1 annot-version=v4.1 MSTITVSASKHSNILRLLTSHTFLRRLSTEPPEPQPPPQPKTSNHNSIITEALQLLQIPGNEWNTTQLNQLLFTDSPPSSSSPRLFYQITRRLPSSSQAL KFLNYLQNNSPSSPDTQSLLSYTFQAIFELAFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPSVKNTYLRNVWLSIL LRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLG AVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQ EGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC NVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTL IAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNT TTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKFVAGCEVSSSTAQKASSRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	0	1
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.012G043700 [exp]	1.00	0.9469
AT5G04010			F-box family protein (.1)		Potri.004G076800 [exp]	1.41	0.9454
					Potri.003G088350 [exp]	1.73	0.9436
AT1G26800			RING/U-box superfamily protein...		Potri.010G168300 [exp]	2.82	0.9427
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	8.30	0.8983
					Potri.014G059200 [exp]	9.27	0.8923
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	9.79	0.9189
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	10.58	0.8972
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.006G178900 [exp]	12.24	0.8967
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	14.07	0.8992

Compare expression of checked genes

Potri.014G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.