Plant FIBer expression Database

Potri.014G090500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46110 580 / 0 PANB1, KPHMT1 ketopantoate hydroxymethyltransferase 1 (.1)
AT3G61530 574 / 0 PANB2 Phosphoenolpyruvate carboxylase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G164601
[exp]
122 / 1e-33 AT3G61530 92 / 7e-23 Phosphoenolpyruvate carboxylase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010142
[exp]
572 / 0 AT3G61530 581 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2)
Lus10001878
[exp]
225 / 3e-73 AT2G46110 227 / 1e-74 ketopantoate hydroxymethyltransferase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF02548 Pantoate_transf Ketopantoate hydroxymethyltransferase
Representative CDS sequence
>Potri.014G090500.1 pacid=42763727 polypeptide=Potri.014G090500.1.p locus=Potri.014G090500 ID=Potri.014G090500.1.v4.1 annot-version=v4.1
ATGGGTTTACTCACTTACCTCACCAAATCCTCTTCCACTCTCAAACCCACAACTCTTCTCCGCCACCTCCGCTTCATGAGCAACGTCCCTGAAAACACCG
TCTACGGCGGACCGAAGCCACAAAACCCACACCAAAGAGTAACACTAACCCATTTAAAGCAAAAACACAAAAAGGGTGATCCGATAACTGTTGTGACTGC
CTATGACTACCCTTCTGCGGTCCACTTAGACACAGCAGGTATCGATGTTTGTTTAGTTGGTGACTCCGCTTCCATGGTTGTTCACGGCCATGACACCACT
CTCCCTATCTCTCTTGACGAGATGCTTGTTCATTGCCGTGCTGTTGCTCGTGGCGCCAAAAGGCCGCTTCTCGTAGGTGACTTGCCCTTTGGGACTTACG
AGTCTAGTTCTAACCAGGCGGTTGATACGGCAGTTAGGATTTTGAAGGAAGGAGGGATGGATGCGATTAAATTGGAAGGAGGGTCGCCATCGAGAATTAC
TGCTGCTAAAGCAATTGTTGAGGCTGGAATTGCTGTTATGGGACATGTAGGACTTACTCCTCAGGCTATTAGTGTTCTTGGAGGATTCAGGCCTCAAGGG
AAAAACATTGCCAGTGCTGTAAAGGTTGTAGAAACTGCACTGGCTTTGCAAGAAGCAGGATGTTTCTCGGTAGTTTTAGAATGCGTGCCTGCTCCCGTGG
CAGCTGCAGCAACTTCTGCTCTTAAAATCCCAACCATTGGCATTGGGGCAGGACCTTTTTGCAGTGGCCAGGTGCTAGTTTACCATGATCTATTGGGAAT
GATGCAACATCCACATCATGCCAAGGTTACTCCAAAGTTCTGTAAGCAGTATGCTCATGTTGGAGATGTCATCAACAAAGCTCTAGTTGAATACAAGGAA
GAAGTGGCAAATGGTTCGTTCCCTGGTCCTGCCCACAGTCCATATAAAATTAGTGAAACTGAGATAAATGGTTTCATGAGCGAATTGCAAAAGTTAGGTT
TGGACAAGGCAGCCGCTTCAACAGCTGCAGCAGCTGAGAAAATTAAAATGTCTGTATCAAGTAATGGTCCAGCAAATGATTGA
AA sequence
>Potri.014G090500.1 pacid=42763727 polypeptide=Potri.014G090500.1.p locus=Potri.014G090500 ID=Potri.014G090500.1.v4.1 annot-version=v4.1
MGLLTYLTKSSSTLKPTTLLRHLRFMSNVPENTVYGGPKPQNPHQRVTLTHLKQKHKKGDPITVVTAYDYPSAVHLDTAGIDVCLVGDSASMVVHGHDTT
LPISLDEMLVHCRAVARGAKRPLLVGDLPFGTYESSSNQAVDTAVRILKEGGMDAIKLEGGSPSRITAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQG
KNIASAVKVVETALALQEAGCFSVVLECVPAPVAAAATSALKIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQYAHVGDVINKALVEYKE
EVANGSFPGPAHSPYKISETEINGFMSELQKLGLDKAAASTAAAAEKIKMSVSSNGPAND

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46110 PANB1, KPHMT1 ketopantoate hydroxymethyltran... Potri.014G090500
[exp]
0 1
AT5G34930 arogenate dehydrogenase (.1) Potri.008G074500
[exp]
3.46 0.7814
AT5G59080 unknown protein Potri.009G038300
[exp]
4.24 0.8004
AT1G56560 A/N-InvA alkaline/neutral invertase A, ... Potri.013G006600
[exp]
4.89 0.7986
AT4G36730 bZIP GBF1 G-box binding factor 1 (.1.2) Potri.007G029400
[exp]
8.77 0.7918
AT5G64250 Aldolase-type TIM barrel famil... Potri.017G051800
[exp]
10.72 0.7671
AT1G08680 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-lik... Potri.013G068300
[exp]
12.36 0.7761 ZIGA4.1
AT5G04590 SIR sulfite reductase (.1) Potri.001G257000
[exp]
14.14 0.7468 Pt-SIR.2
AT2G44130 Galactose oxidase/kelch repeat... Potri.003G218400
[exp]
15.96 0.7784
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Potri.008G122200
[exp]
16.91 0.8021
AT3G06580 GAL1, GALK GALACTOSE KINASE 1, Mevalonate... Potri.010G148100
[exp]
18.00 0.7832 Pt-GAL1.3

Potri.014G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.