Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61540 352 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G164700 [exp] 433 / 3e-151 AT3G61540 666 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010141 [exp] 354 / 4e-119 AT3G61540 690 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10001877 [exp] 348 / 6e-118 AT3G61540 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035652 [exp] 42 / 0.0004 AT2G14260 560 / 0.0 proline iminopeptidase (.1.2) Lus10010743 [exp] 41 / 0.0008 AT2G14260 565 / 0.0 proline iminopeptidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.014G090601.1 pacid=42763240 polypeptide=Potri.014G090601.1.p locus=Potri.014G090601 ID=Potri.014G090601.1.v4.1 annot-version=v4.1 ATGCTGTTCAATTACGCGCCACCCTCGTTGATAAAACCAGTACTCCATTTCACTTCCTCCTTTGCCTTATCTCCTCGTGCTGTTCCTCATCCAGTCAATA AAATTCCCCTTTTCCACTCTCTCCGGATCTTCCGTACTTTCGCTGCCATGTCTGAAACTAACTCCGCCTCCGATTCTACGCCGGATCACATATCCGGAAC GTGGTACTCGGTGCCGGGCCTCCGCCTTCGGGACCACCGATTCACTGTCCCTCTCGATTATTCCATCGATCGCAATGCTTCTCCTAAAATCTCCGTTTTC GCTCGCGAAGTCGTTTCCGTTGGGAAAGAAGAACACCTACTGCCATACCTATTATATCTACAAGGGGGGCCGGGCTTTGAGTGCCCACGGCCAACTGAAG CCAGTGGATGGATACATAAAGCTTGTGAAGAATTTCGTGTTATTTTGATGGACCAGCGAGGAACAGGCTTATCAGTTCCTTTGACACCATCATCCATGTC GCAATTGGATTCTGCGGAGGAGGTTGCTGAATACTTGAAATACTTTAGAGCTGACAATATAGTGAATGATGCAGAGTTTATCCGAGTTTGTCTTGTTCCT GAAGCTGGACCTTGGACGGTTTTGGGTCAGAGCTATGGTGGTTTTTGTTCAGTAACCTATTTGAGCTTTGCGCCACAAGGGTTAAAACAGGTCCTTCTAA CTGGAGGAATCCCTCCAATAGGAAATGGATGCACTGCAGATTCTGTCTATAGAGCATGCTACGCTCAGGTTATTCACCAGAATGAAAAGTACTACAAGAG GTTTCCTCAGGATGTTGAAATTGTTCATGAAGTTGTGAAGTATTTGGCAGAATCTGAAGGAGGCGGGGTGCTTCTTCCATCAGGGGGGCTCTTAACCCCA AGAGGACTGCAAACTCTTGGTCTCTCTGGTTTAGGATCCAGTTCAGGTTTCGAGCGTGTCTGCACTATATGTTTGAGAGGGTTTGGGATCCTGTAA
AA sequence Show only first row Show all	>Potri.014G090601.1 pacid=42763240 polypeptide=Potri.014G090601.1.p locus=Potri.014G090601 ID=Potri.014G090601.1.v4.1 annot-version=v4.1 MLFNYAPPSLIKPVLHFTSSFALSPRAVPHPVNKIPLFHSLRIFRTFAAMSETNSASDSTPDHISGTWYSVPGLRLRDHRFTVPLDYSIDRNASPKISVF AREVVSVGKEEHLLPYLLYLQGGPGFECPRPTEASGWIHKACEEFRVILMDQRGTGLSVPLTPSSMSQLDSAEEVAEYLKYFRADNIVNDAEFIRVCLVP EAGPWTVLGQSYGGFCSVTYLSFAPQGLKQVLLTGGIPPIGNGCTADSVYRACYAQVIHQNEKYYKRFPQDVEIVHEVVKYLAESEGGGVLLPSGGLLTP RGLQTLGLSGLGSSSGFERVCTICLRGFGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	0	1
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	2.44	0.7653
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	3.74	0.7977
AT2G39580			unknown protein		Potri.010G208200 [exp]	7.07	0.7912
AT5G25560			CHY-type/CTCHY-type/RING-type ...		Potri.006G245400 [exp]	8.12	0.7261
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103132 [exp]	21.02	0.7026
AT1G13750			Purple acid phosphatases super...		Potri.008G096000 [exp]	24.57	0.7485
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.008G101800 [exp]	27.11	0.7258
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	31.36	0.6807
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	36.49	0.7107	XPO1.2
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	39.66	0.7121

Compare expression of checked genes

Potri.014G090601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.