Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PM22.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) AT1G01470 201 / 3e-67 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) AT2G44060 78 / 1e-17 Late embryogenesis abundant protein, group 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165000 [exp] 236 / 3e-81 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1) Potri.007G146300 [exp] 74 / 2e-16 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010140 [exp] 227 / 3e-77 AT1G01470 191 / 3e-63 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010139 [exp] 207 / 9e-70 AT1G01470 182 / 6e-60 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001869 [exp] 206 / 3e-69 AT1G01470 182 / 1e-59 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001876 [exp] 205 / 3e-65 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10036402 [exp] 186 / 1e-61 AT1G01470 167 / 4e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10007905 [exp] 184 / 1e-60 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10008337 [exp] 79 / 9e-18 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.014G090800.1 pacid=42763110 polypeptide=Potri.014G090800.1.p locus=Potri.014G090800 ID=Potri.014G090800.1.v4.1 annot-version=v4.1 ATGTCGGAGTTGCTATGCAAGGCCAAGCAGTTTTTGGTAGAGAAGGTGGCTAATGTCAAGACCCCGGAGGCTACCGTCACCGACGTGGATCTTGAAGGCG TGCACCGTGACAGCATAGACTACGGTGCAAAGGTGTCTGTCGATAACCCTTATGAAGCTGCGATCCCTATTTGCGAGATTTCTTACGTTCTCAAAAGTGA TGGCAGGGTGATCGCATCAGGGACAATACCAGACCCTGGCTCGCTGAAAGCTAAAGACACAACAATCTTAGATGTGCCAGTGAAGGTGCCACACAGTGTA CTGGTGAGCTTGGTGAAGGACATTGGTAGAGACTGGGACATAGACTACGAGTTGGAAATAGGTCTCACAATTGACCTCCCTATCGTCGGCAATTTCACCA TTCCTCTCTCCTGGAAGGGTGAAGTCAAGCTGCCTACCCTCTCCGATCTGTTCTAA
AA sequence Show only first row Show all	>Potri.014G090800.1 pacid=42763110 polypeptide=Potri.014G090800.1.p locus=Potri.014G090800 ID=Potri.014G090800.1.v4.1 annot-version=v4.1 MSELLCKAKQFLVEKVANVKTPEATVTDVDLEGVHRDSIDYGAKVSVDNPYEAAIPICEISYVLKSDGRVIASGTIPDPGSLKAKDTTILDVPVKVPHSV LVSLVKDIGRDWDIDYELEIGLTIDLPIVGNFTIPLSWKGEVKLPTLSDLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46140			Late embryogenesis abundant pr...		Potri.014G090800 [exp]	0	1	PM22.1
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	2.82	0.7813
					Potri.002G172050 [exp]	6.70	0.7402
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	10.39	0.7645
AT1G63410			Protein of unknown function (D...		Potri.001G106300 [exp]	13.30	0.7816
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	14.96	0.7274
					Potri.008G088401 [exp]	15.32	0.7043
					Potri.001G142150 [exp]	20.61	0.7288
AT1G27290			unknown protein		Potri.003G170300 [exp]	27.49	0.5956
AT5G14020			Endosomal targeting BRO1-like ...		Potri.001G323600 [exp]	31.30	0.7766
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.014G016700 [exp]	39.71	0.6754

Compare expression of checked genes

Potri.014G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.