Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46180 587 / 0 GC4 golgin candidate 4 (.1) AT3G61570 546 / 0 GC3 ,GDAP1 GOLGIN CANDIDATE 3, GRIP-related ARF-binding domain-containing protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165500 [exp] 1144 / 0 AT2G46180 609 / 0.0 golgin candidate 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036406 [exp] 714 / 0 AT2G46180 671 / 0.0 golgin candidate 4 (.1) Lus10041081 [exp] 714 / 0 AT2G46180 676 / 0.0 golgin candidate 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G091300.3 pacid=42762531 polypeptide=Potri.014G091300.3.p locus=Potri.014G091300 ID=Potri.014G091300.3.v4.1 annot-version=v4.1 ATGATGTGGAGCTCCATTGCGAATTTGAAGCAAAACCTTGAAAAGATTGCACTTGATGTTCATGACGACGATGAGGATCTCGAGATCCATGCTTCCACCA ATGGCTACGATTCGTCGGTATCTGATCGGAGGAATTCTCACCGTTTCGCGCATTCGAAGTCGGTCTCACCGTCTCCTACTGCGAATGGGAATGACTCACC GTACAATTTTGAGATTGAACAGTACAAAGCACAAATCAAAAGGCACCAGGAATCTGAGGCGGAGATTAAAGCATTATCTGTGAATTATGCAGCTATATTA AAAGAGAAAGAGGATCAGATTTCTAGATTGAACCAAGAAAATGGTTCGTTGAAGCAAAATTTGGATGTGACAAAGGAGGCTCTTAATGTGTCTAGAAATG AGCATCGAAGAGCATCAACAAGTAGCATCAAGGAAAGTGGCGACCAATCACCCAAACGACCACATAGACCTGCAACTCAAGCAAAAAACCGTGGTGGAAA TCAAATACAAAACAGAGTCTTTCCAAAACATGATGGAATGGGCAATGGAATATTACATGATGTTCATCCTGATGTGATTCAGAGTAAGATGGAAACCAAG AAGGACAAGGAGCTTGCAGATTTGCTGGAGGAGAAAAATAGGTCTCTGGCAGCAATGAAAGCTACTCATGAGTTGGAAATAAAAGAGCTAAGAACTGAAC TTGAAAAAGAACGCCGCAAATCAGCAAATATACAGATAAAATTGCAAGAGGAACAAAGTATTAACAAATCTTTTCAGGAGGAGCTCCGGATTCTAAATAT GGACCATCACAAAACCTCAGTAGATGTGAGCAAAATTCATAATGAATTGAATGAAAAAACATCAGAGATAAGACGATTGCAGATAGAGTTGAGTACGCGG GAAGATGAAGATCCCAATGTCAATGTAAAGAGTTTGAAAAGAGTCATTGCAACTTTAGAGAAGGAAAATGCTAATCTCAAGATGGCAAGGAATGAACTTG AGGCTGCTTTGAAAAGAAGCAAGAACTCTTCTCCTAACGAAACTTCTCCAGATGGGAAAGTGGATTCAACTACAACTTCTCCTAGAAAGGAGGAAATGGA GCTATTGCTGCAAAAATTGGAGAGAGATTTGAAGGAAACACGCCATGAAAAGGAGAAAGCATTGCAACAATTGGCCCGTCTCAAACAGCATTTGTTGGAA AAGGAATCTGAAGAATCGGAAAAAATGGATGAAGACAGTAAGATCATTGAAGAACTCCGTCAGAGTAATGAATATCAAAAGGCTCAAATATTACATTTGG AGAAAGCTCTAAAGCAGGCAATTGCAGGCCAGGAGGAAGTCAGGATGATGAACAGCAATGAAATCCAGAAGTCCAAAGAAATGACTGAAGATTTGAAAAA AAAACTTGCAAACTGTATGAGCACAATAGAATCAAAAAATGTTGAACTTCTAAATCTTCAAACTGCTCTTGGGCAGTATTTTGCTGAAGTTGAAGCAAAG GAATATTTGGAGCGACAGTTGGCTTTGACAAAAGAAGAATCAGCTAAGCGTTTTCAACTTTTGAAAGAAGCAGAGATAGGGACAGAGGAATCAAAGAGGG AGAAAGAAGAAATTTTAGCCAAGCTTTCAGACGTTGAAAGGAAGTTTGCAGAAGGGAAGAGCAGAGTGAATAAGCTCGAGGAAGACAATGCAAAACTTCG TCGTGCTGTTGAGCAGAGTGTGAGCAGACTCAATAGGATGTCCATGGATTCTGATTATCTAGTTGACAGGCGCATTGTGATTAAATTACTAGTGACCTAC TTCCAGAGAAACCACAGCAAAGAGGTTTTGGATCTTATGGTTCGAATGCTTGGGTTCTCGGATGAAGACAAGCAGAGAATAGGTGTAGCTCAACAAGGTG GAAAAGGTGTTGTTCGTGGGGTTTTGGGGCTACCTGGTCGCCTAGTTGGTGGAATCTTGGGTGGAAGTGCAGCTGGTGTTCAAATGAATTTGGCATCCGA TAACCAGTCCTTTGCAGATATGTGGGTTGATTTTCTTCTCAAGGAAACTGAAGAAAGGGAAAAGAGGGAATCTGGGCAAGATACAGGTAGACCCAATGAA GACTCGCAAGGAAGGAGTCCAAATACTACTGGGGTTAGTTCGTCGGTGCCCAACCATGGAACTAGCACATCTGGACCAAATCTTTCTCCAGCTCAAAATC ATGGTCCTGTAGCCCCTCGAGGAAATTCGCTGCCGTTTGCACATATCGATTCCGAGTTCTCAACAGTTCCTTTAACATCCTTGGACAACCCTTCTCGGAT CTCAAGACTGCTCACAAAACATTGA
AA sequence Show only first row Show all	>Potri.014G091300.3 pacid=42762531 polypeptide=Potri.014G091300.3.p locus=Potri.014G091300 ID=Potri.014G091300.3.v4.1 annot-version=v4.1 MMWSSIANLKQNLEKIALDVHDDDEDLEIHASTNGYDSSVSDRRNSHRFAHSKSVSPSPTANGNDSPYNFEIEQYKAQIKRHQESEAEIKALSVNYAAIL KEKEDQISRLNQENGSLKQNLDVTKEALNVSRNEHRRASTSSIKESGDQSPKRPHRPATQAKNRGGNQIQNRVFPKHDGMGNGILHDVHPDVIQSKMETK KDKELADLLEEKNRSLAAMKATHELEIKELRTELEKERRKSANIQIKLQEEQSINKSFQEELRILNMDHHKTSVDVSKIHNELNEKTSEIRRLQIELSTR EDEDPNVNVKSLKRVIATLEKENANLKMARNELEAALKRSKNSSPNETSPDGKVDSTTTSPRKEEMELLLQKLERDLKETRHEKEKALQQLARLKQHLLE KESEESEKMDEDSKIIEELRQSNEYQKAQILHLEKALKQAIAGQEEVRMMNSNEIQKSKEMTEDLKKKLANCMSTIESKNVELLNLQTALGQYFAEVEAK EYLERQLALTKEESAKRFQLLKEAEIGTEESKREKEEILAKLSDVERKFAEGKSRVNKLEEDNAKLRRAVEQSVSRLNRMSMDSDYLVDRRIVIKLLVTY FQRNHSKEVLDLMVRMLGFSDEDKQRIGVAQQGGKGVVRGVLGLPGRLVGGILGGSAAGVQMNLASDNQSFADMWVDFLLKETEEREKRESGQDTGRPNE DSQGRSPNTTGVSSSVPNHGTSTSGPNLSPAQNHGPVAPRGNSLPFAHIDSEFSTVPLTSLDNPSRISRLLTKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	0	1
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	1.00	0.9356
AT1G76250			unknown protein		Potri.012G136700 [exp]	2.23	0.8966
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	4.58	0.9006
AT1G54920			unknown protein		Potri.013G023600 [exp]	5.47	0.8929
AT4G20300			Protein of unknown function (D...		Potri.001G073400 [exp]	7.00	0.8674
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	9.16	0.8841
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.009G010400 [exp]	9.59	0.8985
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	10.90	0.8950	ALPHA.13
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	11.48	0.8903
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	15.68	0.8957

Compare expression of checked genes

Potri.014G091300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.