Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46200 306 / 3e-101 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000549 [exp] 376 / 4e-128 AT2G46200 371 / 1e-126 unknown protein Lus10022202 [exp] 168 / 1e-47 AT2G46200 221 / 2e-68 unknown protein Lus10021211 [exp] 152 / 3e-42 AT2G46200 196 / 1e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16021 [poplar] [flax] PDCD7 Programmed cell death protein 7
Representative CDS sequence Show only first row Show all	>Potri.014G091400.4 pacid=42763565 polypeptide=Potri.014G091400.4.p locus=Potri.014G091400 ID=Potri.014G091400.4.v4.1 annot-version=v4.1 ATGCATCCGGTTCCTTTTCATGCGACTCCTGCTGCACCTCCTCCTCCCTGGTTCCCGATGTTACCCCCTAATCCACCACAGTCGACTCCTTTTTGGGACA CCAAAAATGTGCATGATCGGCTGAAAGAGTTACAGGACACGTTAACTCTTGCTACATCAATGCAGAAAGAGCTTGAGATGTTGATGACAATCAAAAGCAC TGAAGGGTCTGTGGAAGAGGGGGAAGGGGAATCTACCGACCCTTATGCTTGTGGGTTGTACGAGTATTTGAAAGATAGGAAAATTGATTTGGAAGCACAG GAATCACTTTCGGTGAATGCTGCAAATGCTTTGATGTCAAGATTAAAAGCTCAATTAGAGCCATTTAGAGTAATCATAGATGATGTCACTCCATGGGAAG AGAAATCAATGGCAGCTAGATTGTCTAATAAAATATTGAAGTCCAAGCGTAATAAACTTTGGAGGAAGAGGAAGAGACAACGTGCTGCAGAAATCCACAC AAAGGTACATGAACAATTTGACCAAGCTGATCGTGTAGCTGATGAGTGGAGGGCTAGGGAGATAGCAAAGGATGCTGCACAACTCAAGGTGGAAAAGATG AAAGAAATTGCAAAGCTTAAAGCAAAAGAAGAGAGGAAGAGGCTAGAATCTGAGCTTGAGCTGGTATTAGTTGTGGAGAAGTTGCAAGAATTGCGCTCCA TCAGGATTCAAAAATTGAAGAAACAAGGACATTTTCTCCCCGAGGAGGATGACAAGTTTCTTGAGAGAGTTCGAGCTGCAGTTGAGGAAGAAGAGCGCCA AGCAATGGCTGCAGCTGAAACAGATGCTGCCAAGGGTGCCATTGCAACAGCTGAGGAATCTAGGAAAACAATCCAGAGTGGTGGGCTGCACACTAAAGAT GCAAGTGATGCCAAAGATGGAATGAAGGAAAGTAATGATGAAATAAATGAGAGCACGGACAATTTAGGCTCTGGTGCAGTTCCTGGTCCATCTGGAGAAA AAGGATCTAAAGGTCAAGTTTATGGTGGAGCTTATGATTCTGTAGCAAATTTGCCAATTGAATTCTACCACTATTATCATGGCAGCAATAATGATATGGG CACACTTATCGAGGTTAGAAGAACATGGGATGCGTATATAAGACCAGGAGGAAGCCGCATACCAGGCCACTGGGTTCAGCCACCACCGCCGGCAGATGAT ATATGGGCATCCTACCTCGTTAGGCCTAAATGA
AA sequence Show only first row Show all	>Potri.014G091400.4 pacid=42763565 polypeptide=Potri.014G091400.4.p locus=Potri.014G091400 ID=Potri.014G091400.4.v4.1 annot-version=v4.1 MHPVPFHATPAAPPPPWFPMLPPNPPQSTPFWDTKNVHDRLKELQDTLTLATSMQKELEMLMTIKSTEGSVEEGEGESTDPYACGLYEYLKDRKIDLEAQ ESLSVNAANALMSRLKAQLEPFRVIIDDVTPWEEKSMAARLSNKILKSKRNKLWRKRKRQRAAEIHTKVHEQFDQADRVADEWRAREIAKDAAQLKVEKM KEIAKLKAKEERKRLESELELVLVVEKLQELRSIRIQKLKKQGHFLPEEDDKFLERVRAAVEEEERQAMAAAETDAAKGAIATAEESRKTIQSGGLHTKD ASDAKDGMKESNDEINESTDNLGSGAVPGPSGEKGSKGQVYGGAYDSVANLPIEFYHYYHGSNNDMGTLIEVRRTWDAYIRPGGSRIPGHWVQPPPPADD IWASYLVRPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46200			unknown protein		Potri.014G091400 [exp]	0	1
AT2G34040			Apoptosis inhibitory protein 5...		Potri.004G052300 [exp]	1.00	0.8700
AT4G24500			hydroxyproline-rich glycoprote...		Potri.002G111500 [exp]	2.44	0.8651
AT1G28530			unknown protein		Potri.004G051000 [exp]	4.00	0.8503
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	5.65	0.8677
AT1G21560			unknown protein		Potri.002G077500 [exp]	8.00	0.8108
AT5G13520			peptidase M1 family protein (....		Potri.010G215700 [exp]	11.74	0.8600
AT5G53060			RNA-binding KH domain-containi...		Potri.015G011100 [exp]	12.60	0.8160
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	13.85	0.8549
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	14.14	0.8622
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	14.96	0.8507

Compare expression of checked genes

Potri.014G091400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.