Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46210 722 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT3G61580 685 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G53560 74 / 1e-15 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT5G48810 72 / 5e-15 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G26340 71 / 1e-14 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G32720 64 / 5e-12 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT1G60660 61 / 4e-11 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT2G46650 54 / 1e-08 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 55 / 8e-08 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT5G09680 53 / 9e-08 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165800 [exp] 875 / 0 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.006G228200 [exp] 662 / 0 AT2G46210 620 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.001G314200 [exp] 67 / 2e-13 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 66 / 5e-13 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.002G242500 [exp] 66 / 5e-13 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 66 / 6e-13 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 61 / 4e-11 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.018G087600 [exp] 60 / 5e-11 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.015G007600 [exp] 57 / 6e-10 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036408 [exp] 711 / 0 AT2G46210 700 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10035482 [exp] 649 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10031102 [exp] 647 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10041083 [exp] 625 / 0 AT2G46210 595 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10011858 [exp] 67 / 3e-13 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 66 / 1e-12 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10008838 [exp] 64 / 3e-12 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 64 / 5e-12 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10000651 [exp] 64 / 6e-12 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10036973 [exp] 64 / 6e-12 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF00487 [poplar] [flax] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Potri.014G091800.1 pacid=42763389 polypeptide=Potri.014G091800.1.p locus=Potri.014G091800 ID=Potri.014G091800.1.v4.1 annot-version=v4.1 ATGGAGGGAGATAAGAAGGGCATTACAAGCGAAGAGCTTAAGCAGCACAACAAGGCAGGAGACTTGTGGATCTCTATTCAGGGAAAGGTTTACGATGTCT CTGATTGGGCAAATGAGCATCCGGGTGGAGATGTTGCTCTCATGAATATGGCAGGCCTAGATGCTACTGATGCATTCATTGCCTACCATCCTGGAACAGC ATGGAAATATCTTGATAAGCTCTTTACAGGGTATTATCTCACAGATTTCAAGCTATCAGAGACATCCAAGGATTACAGGAGGCTTGCTTCAGAGTTTGCT AAACTGGGCCTGTTCGAAAAGAAAGGACATATTACTATGTATGCACTGACATCTATTGTATTGATGTTTTGTGTTGTTCTTTATGGTGTTTTGTGTTGCC AGAGTGTTTGGGCTCATTTTGGTTCTGCTGTGGTGTTGGGGTTTCTTTGGATTCAAAGTGCCTATATTGGTCATGATTCAGGGCATTACCAGGTGATGAA CACTCGTGGTTCTAACAAACTCGCTCAATTCGTCGCTGGAAACTCGCTCACGGGTATTAGCATTGCTTGGTGGAAATGGACCCACAATGCACACCATCTC GCTTGCAACAGTCTTGATTATGATCCTGATCTTCAACACATACCAGTCTTTGCGGTAAATTCGATTTTTTTCAATTCTATAAAGTCTTGCTTTTATGGAA GGTACTTAAATTTTGATCCTGTGGCCAGGTTCTTTGTGAGTTACCAACACTGGACTTTTTATCCAGTAATGTGTGTTGCGAGGGTCAATTTGTACATACA AACGTTCTTGCTATTGTTTTCAAAGAGAAGATTCCCAGATAGAGCTTTGAACATCTTGGGAATTCTTATCTTCTGGACTTGGTTCCCTCTACTTGTGTCT TGCATCCCTAATTGGCCCGAGAGGGTGATGTTTGTGCTTACAAGCTTTGCTGTTACGGCAATTCAACACGTTCAATTTTGTTTGAATCATTTTGCGGCCG ATGTTTACTCTGGACTTCCAGAAGGGAATGATTGGTTTGAGAAACAGACAAGTGGGACTTTGGATATTTCGTGTTCATCTTGGATGGATTGGTTTTATGG TGGTTTGCAGTTTCAGCTTGAGCATCATTTGTTTCCAAGGATGCCGAGATGCCAATTGAGAAGAGTTTCACCATTGGTACAGGATCTGTGCAAGAAGCAC AATTTATCTTACAGGAGCTTGTCCTTCTGGGAAGCCAACGTGTGGACAATCAGGAAACTCAGGAATGTCGCTCTGCAGGCTAGGGACCTGGCCAACCCTG TTCCGAAAAATATGCTGTGGGAAGCTGTTAATACTCACGGATGA
AA sequence Show only first row Show all	>Potri.014G091800.1 pacid=42763389 polypeptide=Potri.014G091800.1.p locus=Potri.014G091800 ID=Potri.014G091800.1.v4.1 annot-version=v4.1 MEGDKKGITSEELKQHNKAGDLWISIQGKVYDVSDWANEHPGGDVALMNMAGLDATDAFIAYHPGTAWKYLDKLFTGYYLTDFKLSETSKDYRRLASEFA KLGLFEKKGHITMYALTSIVLMFCVVLYGVLCCQSVWAHFGSAVVLGFLWIQSAYIGHDSGHYQVMNTRGSNKLAQFVAGNSLTGISIAWWKWTHNAHHL ACNSLDYDPDLQHIPVFAVNSIFFNSIKSCFYGRYLNFDPVARFFVSYQHWTFYPVMCVARVNLYIQTFLLLFSKRRFPDRALNILGILIFWTWFPLLVS CIPNWPERVMFVLTSFAVTAIQHVQFCLNHFAADVYSGLPEGNDWFEKQTSGTLDISCSSWMDWFYGGLQFQLEHHLFPRMPRCQLRRVSPLVQDLCKKH NLSYRSLSFWEANVWTIRKLRNVALQARDLANPVPKNMLWEAVNTHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.014G091800 [exp]	0	1
AT5G22090			Protein of unknown function (D...		Potri.009G016600 [exp]	1.73	0.9395
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.010G166200 [exp]	3.46	0.9332
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108500 [exp]	3.87	0.9223	LEA1.6
					Potri.006G083850 [exp]	6.70	0.8964
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	6.92	0.8969
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.001G439600 [exp]	6.92	0.9006
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.013G059700 [exp]	12.36	0.8380
AT5G01750			Protein of unknown function (D...		Potri.016G131800 [exp]	14.56	0.7391
AT1G79120			Ubiquitin carboxyl-terminal hy...		Potri.001G439100 [exp]	16.43	0.8764
AT1G51920			unknown protein		Potri.001G172850 [exp]	20.17	0.8849

Compare expression of checked genes

Potri.014G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.