Plant FIBer expression Database

Potri.014G092200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46220 273 / 4e-93 Uncharacterized conserved protein (DUF2358) (.1)
AT1G16320 188 / 3e-59 Uncharacterized conserved protein (DUF2358) (.1)
AT1G79510 187 / 9e-59 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G173000
[exp]
186 / 1e-58 AT1G79510 357 / 4e-125 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Potri.008G083400
[exp]
79 / 8e-19 AT1G79510 192 / 1e-62 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Potri.013G036500
[exp]
43 / 9e-05 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010135
[exp]
288 / 7e-99 AT2G46220 254 / 2e-85 Uncharacterized conserved protein (DUF2358) (.1)
Lus10012651
[exp]
286 / 5e-98 AT2G46220 256 / 4e-86 Uncharacterized conserved protein (DUF2358) (.1)
Lus10009597
[exp]
184 / 9e-58 AT1G79510 284 / 2e-96 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Lus10001766
[exp]
180 / 5e-56 AT1G79510 281 / 3e-95 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Lus10015938
[exp]
42 / 0.0002 AT3G04890 223 / 8e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Lus10009193
[exp]
40 / 0.001 AT3G04890 199 / 5e-64 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF10184 DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence
>Potri.014G092200.1 pacid=42762656 polypeptide=Potri.014G092200.1.p locus=Potri.014G092200 ID=Potri.014G092200.1.v4.1 annot-version=v4.1
ATGGCTCTTTTCATTTCACCAGAAATCTCCACCGCAAAAATCCTCTTTAACCCTAACCCTAGAAATCTCAAGAGCCTTAATGTTCGTGTCAGGGCTAGAA
GTGATGTCAGGGTTTCGGGATTGAATCAAAATGTGAGGCTCTACGGTCAATTTTCGGTTCCGGTCAAACAAGAAACGAAGAGGACGAACGAGGAAGAGGA
GAAGCAGAATTACTATGTGAATATGGGTTATGCGATTAGGACTTTGAGAGAGGAGTTTCCCGGGTTGTTTTATAGAGAGCTCAGTTTTGATATCTACAGG
GATGACATTGTCTATAAAGATCCGATCAATACCTTTGGTGGTATTGAGAGTTATAAATCAATGTTCTGGGCTCTGCGTTTCCATGGAAGGATATTTTTCA
GGGCTTTGTGGGTTGACATCATTAGTGTGTCACAGCCTGCAGAGAATGTGATTATGGTTCGATGGACAGTCCATGGCATCCCACGAGTCCCATGGGAGAG
TAGTGCTCAATTTGATGGCCTGTCTGAGTACAAACTTGACAGCAAGGGGAAGATCTTTCAGCATCGGGTCGACAACATTGCTCTTAATTCACCTCCAAAG
TTTCATGTGCTGACTGTGGAGGAATTAATCCAGGCTGTTGGTTACCCCTCAACCCCAAAACCGACTTATTTTGAAGTTTCGCCTTCCTTTTTAAAGACTA
ATTAG
AA sequence
>Potri.014G092200.1 pacid=42762656 polypeptide=Potri.014G092200.1.p locus=Potri.014G092200 ID=Potri.014G092200.1.v4.1 annot-version=v4.1
MALFISPEISTAKILFNPNPRNLKSLNVRVRARSDVRVSGLNQNVRLYGQFSVPVKQETKRTNEEEEKQNYYVNMGYAIRTLREEFPGLFYRELSFDIYR
DDIVYKDPINTFGGIESYKSMFWALRFHGRIFFRALWVDIISVSQPAENVIMVRWTVHGIPRVPWESSAQFDGLSEYKLDSKGKIFQHRVDNIALNSPPK
FHVLTVEELIQAVGYPSTPKPTYFEVSPSFLKTN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46220 Uncharacterized conserved prot... Potri.014G092200
[exp]
0 1
AT1G03310 ATISA2, ISA2, D... BRANCHING ENZYME 2, ARABIDOPSI... Potri.002G219900
[exp]
3.46 0.9423
AT5G27390 Mog1/PsbP/DUF1795-like photosy... Potri.013G026500
[exp]
10.81 0.9398
AT1G07700 Thioredoxin superfamily protei... Potri.014G029200
[exp]
14.14 0.9397
AT1G77670 Pyridoxal phosphate (PLP)-depe... Potri.005G175400
[exp]
14.42 0.9089
AT2G04790 unknown protein Potri.014G162700
[exp]
17.49 0.9217
AT3G09250 Nuclear transport factor 2 (NT... Potri.016G105600
[exp]
20.78 0.9325
AT5G24490 30S ribosomal protein, putativ... Potri.012G005800
[exp]
21.33 0.9042
AT1G57790 F-box family protein (.1) Potri.016G079300
[exp]
22.24 0.9070
AT4G01030 pentatricopeptide (PPR) repeat... Potri.014G097000
[exp]
24.14 0.9085
AT4G04330 AtRbcX1 homologue of cyanobacterial Rb... Potri.011G010300
[exp]
24.18 0.9358

Potri.014G092200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.