Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46225 396 / 9e-140 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) AT3G49290 149 / 8e-43 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G24310 146 / 2e-42 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 119 / 2e-31 ABIL4 ABL interactor-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165900 [exp] 560 / 0 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.012G016900 [exp] 155 / 1e-44 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 137 / 3e-38 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.003G142800 [exp] 132 / 3e-36 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.018G082600 [exp] 96 / 7e-23 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008737 [exp] 428 / 4e-152 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10002151 [exp] 422 / 6e-150 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10005919 [exp] 154 / 4e-44 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10022393 [exp] 118 / 4e-31 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10032421 [exp] 97 / 4e-23 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10023654 [exp] 93 / 2e-21 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10043223 [exp] 88 / 5e-19 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10023052 [exp] 77 / 1e-16 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10034928 [exp] 76 / 1e-16 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10011102 [exp] 76 / 8e-15 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G092300.1 pacid=42763008 polypeptide=Potri.014G092300.1.p locus=Potri.014G092300 ID=Potri.014G092300.1.v4.1 annot-version=v4.1 ATGATGGAATTGGAGCAAACGAGGCCGGAGAATCCGGCCATGACTTTCGATGAGGTGTCCATGGAGCGTAGCAAGAGCTTCATCAAAGCCTTGCAGGAGC TGAAGAACTTAAGGCCTCAATTGTATTCAGCTGCCGAATACTGTGAGAAGTCTTATCTTCATAGTGAGCAGAAACAAACGGTTCTGGACAACCTTAAAGA TTATGCCGTGCGAGCCCTTGTTAATGCTGTCGATCACCTTGGTACTGTGGCTTACAAGTTAACTGACCTTCTTGAGCAACAAGCATTAGAAGTCTCAACC ATGGAGGTTAAGGTTTCTTGTATGAATCAGCAATATCTTACATGCCAAACATATACGGATAAGGAAGGTCTTCGACAGCAGCAGTTGCTGGCATTCATCC CAAGACATCACAAGCACTACGTTTTACAAAACTCTGTCAATAAGAAGGTGCATTTTAGTCCACAAATACAGACTGATGCAAGACAAAATCATTTTCAAGC AAGATCCCGTCTTCAGCCTTCAGGTTCCCCAGCATCAAAAACTCTTTCCTGGCACTTAGCTTCCGAGACAAAGTCTACACTGAAAGGCACTCATGTTATG ACAAGCAATGAAGATACAAAAACTTCTGGAAAACCATCTGTAGTTTTTCAACTTTTGGATAAAGAAGAGAGTGCAAAAACAAGATCTTCGGGAGCTCCAG CTCAACTATCAAGTGGAGGTCCTGCAGCTGGTGCAATCATGCAAAAATTTGGTGTCCCACGCAGGGAATTGTCGGATGGTTCTAAACCTTTGACACCATT CAGGTCTTTTGACAATCCAAGGCATGAGATTGTGCGTGCCCCTGTTCGCAGTAAAAGCATGCTATCAGCTTTCTTTGTAAAACAGAAAACCCTGAAGTTG AAGACTGGCTCTGTCTCATGA
AA sequence Show only first row Show all	>Potri.014G092300.1 pacid=42763008 polypeptide=Potri.014G092300.1.p locus=Potri.014G092300 ID=Potri.014G092300.1.v4.1 annot-version=v4.1 MMELEQTRPENPAMTFDEVSMERSKSFIKALQELKNLRPQLYSAAEYCEKSYLHSEQKQTVLDNLKDYAVRALVNAVDHLGTVAYKLTDLLEQQALEVST MEVKVSCMNQQYLTCQTYTDKEGLRQQQLLAFIPRHHKHYVLQNSVNKKVHFSPQIQTDARQNHFQARSRLQPSGSPASKTLSWHLASETKSTLKGTHVM TSNEDTKTSGKPSVVFQLLDKEESAKTRSSGAPAQLSSGGPAAGAIMQKFGVPRRELSDGSKPLTPFRSFDNPRHEIVRAPVRSKSMLSAFFVKQKTLKL KTGSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.014G092300 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.003G162100 [exp]	1.00	0.9277
AT1G04650			unknown protein		Potri.001G053000 [exp]	2.23	0.8703
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	4.00	0.8811
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.013G123800 [exp]	4.89	0.8633
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	10.95	0.8612
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	11.31	0.8494
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	12.60	0.8770
AT1G06330			Heavy metal transport/detoxifi...		Potri.018G150200 [exp]	12.88	0.7554
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.017G059300 [exp]	14.73	0.8649	SHM4.2
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.002G168400 [exp]	15.09	0.8604

Compare expression of checked genes

Potri.014G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.