Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01220 530 / 0 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01770 475 / 7e-169 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT1G56550 471 / 4e-167 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT4G01750 470 / 5e-167 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT1G70630 72 / 1e-13 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 57 / 8e-09 XEG113 xyloglucanase 113 (.1) AT4G19970 54 / 1e-07 unknown protein AT1G75110 52 / 2e-07 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 49 / 3e-06 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 48 / 6e-06 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166000 [exp] 607 / 0 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 59 / 2e-09 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 56 / 3e-08 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.014G051600 [exp] 47 / 8e-06 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.012G037300 [exp] 47 / 1e-05 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 46 / 2e-05 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 44 / 0.0001 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 43 / 0.0002 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G139800 [exp] 43 / 0.0002 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012650 [exp] 541 / 0 AT4G01220 522 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10002153 [exp] 539 / 0 AT4G01220 541 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10008735 [exp] 469 / 8e-167 AT4G01220 472 / 8e-168 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10006212 [exp] 60 / 1e-09 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 54 / 6e-08 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 49 / 6e-06 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10018812 [exp] 47 / 1e-05 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032455 [exp] 47 / 2e-05 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Lus10034422 [exp] 47 / 2e-05 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10027804 [exp] 47 / 2e-05 AT2G35610 927 / 0.0 xyloglucanase 113 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.014G092400.1 pacid=42762555 polypeptide=Potri.014G092400.1.p locus=Potri.014G092400 ID=Potri.014G092400.1.v4.1 annot-version=v4.1 ATGCCAACATTCTTGCACCAAAGACCTCTCCACGGCACACTATCTGATCCCTACCCGCTATCACCACGCCAATCTTCCTCCTCCCAACGACAAATTTCAC TCTTCAGCCGCACAGGCCTAATAGCCATACTATCCCTCCTCCTAATTCTAGGCGTAATCTTACCCTGGACAGGCACACCCTCAATTTTCTCAGCAACAAA ACCTGCCTCGCTTGCAAAATGGCAACAATACACACTACCCCAAGCGGTGGCGTTTGTTGCAAAAAACAAGACAGTGATTGTTTGCGCAGTTAGCCAACCT TACTTGCCATTTTTAAGTAATTGGTTGATCAGTATTTCGAGACAAAAGCATCAAGATAAGGTTCTTGTTATTGCTGAGGATTATGCTACTCTTTATAATG TCAATGAGAGATGGCCTGGTCATGCTGTTCTTGTGCCTCCTGCTCCTGATTCACAGTCTGCTCATAAGTTTGGTTCTCAGGGATTTTTCAATTTTACATC TAGGAGGCCTCGGCATTTGCTGCACATTTTGGAGCTTGGGTATGATGTGATGTACAATGATGTGGATATGGTGTGGTTAGGAGATCCTTTCCGGTATTTG GAGGGAAACCATGATGTGTACTTCACCGATGACATGGCTGCGGTGAAGCCACTGGACCATTCCCATGATTTACCACCACCAGGTAAAAAGGGGCGCACTT ATATATGTAGTTGCATGATTTTCATGCGTCCCACTGATGGAGCAAAGCTAGTTATGAAGAAATGGATTGAGGAACTTAAAGCTCAGCCTTGGTCCAAAAC AAGGAAAGCCAATGATCAGCCTGCTTTTAACTGGGCATTGAATAAAACAGCTGGACAGGTGGATCTGTATCTTCTGCCCCAGGCAGCATTCCCAACAGGA GGATTATACTTCAAGAATCAGACATGGGTGCAGGAAACTAAGGGAAAGCACGTCATCATTCACAACAATTACATCACAGGTTTTGAGAAGAAGATAAAGC GTTTCCGTGATTATAGTCTCTGGTTGGTGGATGATCATGCAAGTGAGTCCCCCCTTGGAAAATTATAA
AA sequence Show only first row Show all	>Potri.014G092400.1 pacid=42762555 polypeptide=Potri.014G092400.1.p locus=Potri.014G092400 ID=Potri.014G092400.1.v4.1 annot-version=v4.1 MPTFLHQRPLHGTLSDPYPLSPRQSSSSQRQISLFSRTGLIAILSLLLILGVILPWTGTPSIFSATKPASLAKWQQYTLPQAVAFVAKNKTVIVCAVSQP YLPFLSNWLISISRQKHQDKVLVIAEDYATLYNVNERWPGHAVLVPPAPDSQSAHKFGSQGFFNFTSRRPRHLLHILELGYDVMYNDVDMVWLGDPFRYL EGNHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIFMRPTDGAKLVMKKWIEELKAQPWSKTRKANDQPAFNWALNKTAGQVDLYLLPQAAFPTG GLYFKNQTWVQETKGKHVIIHNNYITGFEKKIKRFRDYSLWLVDDHASESPLGKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	0	1
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.019G089800 [exp]	3.16	0.6564
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	5.47	0.6722	FUS12.2
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.010G137600 [exp]	6.70	0.6221
AT2G26680			unknown protein		Potri.014G017900 [exp]	8.30	0.6403
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	12.24	0.6338	BSTCP.2
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.001G280600 [exp]	13.41	0.6045	Pt-ATUBA1.5
AT2G04340			unknown protein		Potri.001G241100 [exp]	18.33	0.5672
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G429200 [exp]	21.93	0.6119
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.016G022700 [exp]	22.97	0.5744
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	23.51	0.6278

Compare expression of checked genes

Potri.014G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.