Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01210 1237 / 0 glycosyl transferase family 1 protein (.1) AT5G04480 694 / 0 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166100 [exp] 1766 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1) Potri.008G029400 [exp] 717 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.010G232000 [exp] 711 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002154 [exp] 1379 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1) Lus10008732 [exp] 1372 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1) Lus10028829 [exp] 690 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10017452 [exp] 681 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.014G092500.1 pacid=42764645 polypeptide=Potri.014G092500.1.p locus=Potri.014G092500 ID=Potri.014G092500.1.v4.1 annot-version=v4.1 ATGGGTTCATTAGAGACGGGAGGAATCTCCTTCAAAAGAGACAAAAACACTCTCATTCGTTCTTATTCAGCTGGTAGAACTGAAAGACACCCCTTTTTGT ATAGACCCAGATCAAGTTTTTCTCGTTTCTTGCGTTTCAAGAAGTTAGATTACATTCAATGGATTTGTACTGTTGCTGTTTTTCTCTTCTTTGTAGTTCT CTTTCAGATGTTTTTGCCTGGTTCTGTGGTTGAGAAATCTGAACTAGGTTCTTCTCCATGGAGAGGAATGGAATTGGTTGATAAGGATTTGTGGTATCTG AAGGAGATTGGTGGGTTAGATTTTGGTGAAGATATTAAGTTTCAACCTTCGAAGATATTACAACATTTTCGAAAAGAAAATAGAGAGATGAATATGTCAT TTAGTAACAGGACATTAAGTCGTTTTCCTTATAGGAAACCCCAGCTTGCATTGGTATTTGCGGATCTGTTGGTTGATCCACACCAGCTGTTAATGGTGAC TGTTGCTACTGCATTGCAAGAGATTGGCTACACAATTCATGTTTATTCACTAGGAGATGGTCCTGCGCAAAGCATTTGGAAGAGCATGAGATCTCCAGTT AACATCATCCAAATCAGCCACAAAATGGAGATTGCTGTTGATTGGCTAAACTATGATGGCATACTTGTGAATTCTCTAGAAACGAAGAGTGTCTTCTCTT GTTTTATGCAGGAACCTTTCAAGTCTGTGCCTCTTATATGGACCATCAATGAAAGAACACTCGCTACTCATTCAAGACAGTACACTTCAAGTTGGCAAAT TGAGCTTCTGTATGATTGGAGAAAAGCTTTCAACCGGGCTACAGTAGTTGTCTTCCCAAATCATGTCCTTCCGATGATGTACTCTGCATTTGACACTGGA AACTATTATGTTATTCCTGGTTCTCCTGCTGATATATGGGAAACAGAAACTACAATGGCATTGTATAATGATGAAATACATGTGAAGATGGGCTATGAAC CCGATGACATTGTCATTGCAATTGTGGGAAGTCAATTTTTGTACAGGGGTTTGTGGCTGGAGCATGCACTTGTTTTGAAGGCTCTATTGCCACTTTTTGC AGAATTTTCATTAGATAATAATTCAAAATCTCATCTCAAAATCATTATTTTAAGTGGGGATCCTACTGGCAACTACAGTGTGGCTGTTGAGGCTATTGCT GCTAACTTGAGTTATCCAAGAGGTACTGTAAAGCACTTTGCTGTTGATGATGATGTGGGCAGTCCCCTCGGTGCAGCTGATCTTGTGATATATGGATCCT TCCTTGAGGAGCAGTCTTTTCCTGAAATTTTGGTGAAAGCCATGTCCATTGGAAAACCCATCATAACCCCAGATCTCTCCATGATCAGGAAATATGTTGA TGACAGGGTGAATGGCTATCTTTTTCCTAAGGAAAACCTCAAGGTTCTAACACAGATTGTATTGCAAGCGATCTCCAAAGGGACATTATCACCTCTGGCT CGTAATATCGCGTCAATGGGAAAAAATACTGCTAAAAACCTCATGGTTCTAGAAACCGTTGAAGGCTATGCTACACTACTTGAAAATGTTGTTGAGCTTC CATCAGAAGTCACACCTCCTAAGGCTGTTTCAGAAATTCCTCCAAAACTGAAAAAAGAGTGGTGCTGGCATCTATTTAAAGCATTTATGAATTCTACGCA TGAAGACAGAACTTTGAAAAGTTCCAGATATTTAAAAACAGTTGAGGAGCAGTGGAACTATATGCAAAAAGAGAGCTCTGGTTCCATAGCTGCTACTAAT GATTCATTCTCATATGACATTTGGGAGGAAGAGAGAAATATTATGATGCTCAATACTAGAAAGAGAAGAGAGGAAGAAGAGCTAAAAGATAGAACTGATC AACCTCATGGAACATGGGAGGATGTGTATAAAAGTGCCAAAAGGGCTGATCGTTCCAGGAATGATTTACATGAAAGGGATGAAGGAGAACTTTTGAGGAC AGGGCAACCATTATGCATTTATGAACCGTATTTTGGGGAAGGAACCTGGTCTTTTCTTCACCAAAGTTCGCTTTATCGTGGAATAGGATTGTCCACAAAA GGTCGAAGGCCCAGGACAGATGACATCGATGCCCCCTCCCGTCTATCACTTCTTAGCAAGCCATACTACCGAGATGCCCTAGGTGAATATGGAGCTTTTT TTGCAATCGCAAATCGGATTGACCGTATTCATAAGAATTCTTGGATAGGGTTTCAATCTTGGAGAGCAACGGCAAGGAAGGCATCTTTGTCTAGGATTGC TGAAAAGGCATTGGTAGATGCTATAGAATCACGAAAGCATGGGGACTCACTTTACTTTTGGGTTCGCATGGACATGGATCCAAGAAACGACTTACAGAGC GACTTTTGGTCATTCTGTGATGCTATAAACGCTGGAAATTGCAAGTTAGCTTTTTCTGAGGCTCTTAAGAGGATGTATGGCATCAAGCATGATTTGGAAT TTTTGCCACCCATGCCTGAAGATGGGGATACATGGTCTGTCATGCTGAGTTTTGCTTTGCCAACAAGGTCCTTCCTAGAGTTTGTAATGTTTTCAAGAAT GTTTGTGGACGCACTGGATGCACAGATGTATGATGAGCACCATCAAAGTGGACGATGTTATCTGAGTCTAGCTAAGGATAAGCATTGCTACTCACGGGTT CTTGAGCTGCTTATAAATGTCTGGGCATACCACAGTGCAAGGCAGATGGTGTACGTGAACCCTGAGACTGGCTTGATGCAAGAGCAGCATGCAGTCAAGA GTCGCAGAGGCAATATTTGGGTCAAATGGTTCTCATACAGCATCCTTAAGAGCATGGATGAGGACTTGGCTGAAGAGGCAGATTCTGATCAGCCCAAGAG AAGATGGTTATGGCCATCAACAGGCGAGGTTGTATGGCAAGGATTATTTGAGAAAGAGAGAAATCTGCGGAATCATCAGAAAGAGAAGAGGAGACAGCAA AGCAAGGACAAACAACAAAGAATGAGGAAAAAACGCCGTCAACCAGTGCTGGGGAAATATGTGAAGCCCCCACCGGAGGACATAGAAAATTCAAACTCTA CGGTGTCCATGTCGGAATCTTTGTAG
AA sequence Show only first row Show all	>Potri.014G092500.1 pacid=42764645 polypeptide=Potri.014G092500.1.p locus=Potri.014G092500 ID=Potri.014G092500.1.v4.1 annot-version=v4.1 MGSLETGGISFKRDKNTLIRSYSAGRTERHPFLYRPRSSFSRFLRFKKLDYIQWICTVAVFLFFVVLFQMFLPGSVVEKSELGSSPWRGMELVDKDLWYL KEIGGLDFGEDIKFQPSKILQHFRKENREMNMSFSNRTLSRFPYRKPQLALVFADLLVDPHQLLMVTVATALQEIGYTIHVYSLGDGPAQSIWKSMRSPV NIIQISHKMEIAVDWLNYDGILVNSLETKSVFSCFMQEPFKSVPLIWTINERTLATHSRQYTSSWQIELLYDWRKAFNRATVVVFPNHVLPMMYSAFDTG NYYVIPGSPADIWETETTMALYNDEIHVKMGYEPDDIVIAIVGSQFLYRGLWLEHALVLKALLPLFAEFSLDNNSKSHLKIIILSGDPTGNYSVAVEAIA ANLSYPRGTVKHFAVDDDVGSPLGAADLVIYGSFLEEQSFPEILVKAMSIGKPIITPDLSMIRKYVDDRVNGYLFPKENLKVLTQIVLQAISKGTLSPLA RNIASMGKNTAKNLMVLETVEGYATLLENVVELPSEVTPPKAVSEIPPKLKKEWCWHLFKAFMNSTHEDRTLKSSRYLKTVEEQWNYMQKESSGSIAATN DSFSYDIWEEERNIMMLNTRKRREEEELKDRTDQPHGTWEDVYKSAKRADRSRNDLHERDEGELLRTGQPLCIYEPYFGEGTWSFLHQSSLYRGIGLSTK GRRPRTDDIDAPSRLSLLSKPYYRDALGEYGAFFAIANRIDRIHKNSWIGFQSWRATARKASLSRIAEKALVDAIESRKHGDSLYFWVRMDMDPRNDLQS DFWSFCDAINAGNCKLAFSEALKRMYGIKHDLEFLPPMPEDGDTWSVMLSFALPTRSFLEFVMFSRMFVDALDAQMYDEHHQSGRCYLSLAKDKHCYSRV LELLINVWAYHSARQMVYVNPETGLMQEQHAVKSRRGNIWVKWFSYSILKSMDEDLAEEADSDQPKRRWLWPSTGEVVWQGLFEKERNLRNHQKEKRRQQ SKDKQQRMRKKRRQPVLGKYVKPPPEDIENSNSTVSMSESL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01210			glycosyl transferase family 1 ...		Potri.014G092500 [exp]	0	1
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	8.48	0.6762
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Potri.014G094100 [exp]	12.64	0.6549
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.019G056500 [exp]	12.96	0.6708
AT2G21340			MATE efflux family protein (.1...		Potri.009G122900 [exp]	13.26	0.5989
					Potri.009G085500 [exp]	24.08	0.6517
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	24.24	0.6163
					Potri.009G144550 [exp]	33.58	0.6201
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Potri.011G071200 [exp]	36.46	0.5863	Pt-ERD2.1
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G124700 [exp]	42.70	0.5555
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	44.72	0.5806

Compare expression of checked genes

Potri.014G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.