Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46230 319 / 2e-112 PIN domain-like family protein (.1.2) AT1G26530 247 / 2e-84 PIN domain-like family protein (.1) AT2G34570 53 / 2e-08 MEE21 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166200 [exp] 371 / 5e-133 AT2G46230 332 / 9e-118 PIN domain-like family protein (.1.2) Potri.004G197200 [exp] 62 / 1e-11 AT2G34570 297 / 3e-101 maternal effect embryo arrest 21, PIN domain-like family protein (.1) Potri.009G159400 [exp] 58 / 1e-10 AT2G34570 210 / 2e-68 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012649 [exp] 344 / 1e-121 AT2G46230 332 / 6e-117 PIN domain-like family protein (.1.2) Lus10010134 [exp] 343 / 2e-120 AT2G46230 335 / 3e-117 PIN domain-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF04900 [poplar] [flax] Fcf1 Fcf1
Representative CDS sequence Show only first row Show all	>Potri.014G092600.3 pacid=42762992 polypeptide=Potri.014G092600.3.p locus=Potri.014G092600 ID=Potri.014G092600.3.v4.1 annot-version=v4.1 ATGGGGAGAGCCAAAAAAGGCCCTAAATTTGCAAAAATGAAGAAGATGATTACCTCTAAAGCAATTAAACAACATAAAGAAGAGGTTTTGAATCCGAAGA AAAAAGATTTGTCCCTCGAAAAGCTTCCAAGAAATGTGCCACAGGTTTCTTCTGCTCTCTACTTCTCATACAACACAGCTTTGGGGCCGCCATATAGGGT CTTGGTGGATACTAACTTCATTAATTTCTCTATTCAGAATAAATTGGATTTAGAGAAGGCAATGCTGGACTGCTTGTATGCGAAATGCACACCTTGCATC ACAGACTGTGTGATGGCGGAACTTGAGAAGTTAGGTCAGAAATACCGCGTGGCTTTAAGGATTGCTAAGGATCCACGTTTTGAGAGACTACCCTGTATTC ATAAGGGGACTTATGCTGATGACTGTATTGTTGAAAGGGTTACCAAGCATAAATGCTATATTGTTGCTACATGTGATCGAGATTTAAAGCGAAGAATCCG CAAGATCCCTGGTGTGCCAATCATGTACATCACTCAACACAAATACTCAATTGAGCGGTTGCCTGAAGCAACAGTAGGCGGAGCTCCACGATATTGA
AA sequence Show only first row Show all	>Potri.014G092600.3 pacid=42762992 polypeptide=Potri.014G092600.3.p locus=Potri.014G092600 ID=Potri.014G092600.3.v4.1 annot-version=v4.1 MGRAKKGPKFAKMKKMITSKAIKQHKEEVLNPKKKDLSLEKLPRNVPQVSSALYFSYNTALGPPYRVLVDTNFINFSIQNKLDLEKAMLDCLYAKCTPCI TDCVMAELEKLGQKYRVALRIAKDPRFERLPCIHKGTYADDCIVERVTKHKCYIVATCDRDLKRRIRKIPGVPIMYITQHKYSIERLPEATVGGAPRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46230			PIN domain-like family protein...		Potri.014G092600 [exp]	0	1
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Potri.019G055300 [exp]	1.41	0.8268
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.014G034600 [exp]	4.47	0.7803
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	9.79	0.7224
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.018G066200 [exp]	12.80	0.7947	NMT1.5
AT3G02020		AK3	aspartate kinase 3 (.1)		Potri.002G236800 [exp]	13.78	0.6836
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.002G128100 [exp]	17.97	0.7005
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.018G087900 [exp]	18.57	0.6448
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	22.09	0.6694
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	22.18	0.7863
AT1G76010			Alba DNA/RNA-binding protein (...		Potri.002G017600 [exp]	28.24	0.6987

Compare expression of checked genes

Potri.014G092600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.