Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30920 425 / 1e-150 ATCOQ3, EMB3002 embryo defective 3002, coenzyme Q 3 (.1) AT1G64970 44 / 7e-05 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT4G25080 43 / 0.0001 CHLM magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077000 [exp] 42 / 0.0005 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033512 [exp] 410 / 1e-144 AT2G30920 416 / 1e-146 embryo defective 3002, coenzyme Q 3 (.1) Lus10020863 [exp] 405 / 7e-143 AT2G30920 410 / 3e-144 embryo defective 3002, coenzyme Q 3 (.1) Lus10009537 [exp] 42 / 0.0006 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13489 [poplar] [flax] Methyltransf_23 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G093100.2 pacid=42764203 polypeptide=Potri.014G093100.2.p locus=Potri.014G093100 ID=Potri.014G093100.2.v4.1 annot-version=v4.1 ATGGCTTTGAAGCTGCTGAGCAAACTCCGAAATCAGAATCTTCAAATCACTCGAAACCGAAACCACCACCGGCTCGTCGATGCCGCCAGATTCTTCTCTG AACAGCCAGTTTCGAATCTTTCGACACCAGATGATAGCAAATTTATTATTAAGAACAAACAACAAACCACCACATCATCTTTGAAACAGCACGAGCTTGC TAAATTCGCAGCCATTTCTGATACCTGGTGGGATTCAGAAGGTCCATTTAAACCATTGCATAACATGAACCCTACAAGACTCGCTTTCATTCGCTCCACG CTTTGTAGACATTTCAGTAAGGATCCGAACTGCGCTAGGCCTTTTGAAGGACTTAAAATTGTTGATGTTGGTTGTGGTGGTGGAATTCTTTCGGAGCCTT TAGCTAGGATGGGAGCAACCGTAACAGGAGTTGATGCGGTGGAGAAAAATATCAATGTTGCACGCCTTCACGCTGATTTGGATCCAGAGACTTCAACCAT TGAATACTGTTGCACAACAGCTGAAAAGCTAGTCGAGGAGCAGAGGAAGTTTGATGCTGTGATTGCACTGGAGGTAATTGAGCACGTGGCAGCTCCTGCT GAATTCTGCAAGTCGCTGGCAGCACTGGCTTATCCTGGTGGAGCCACTGTAATATCAACAATTAATCGTTCTATGAGAGCGTATGCGACTGCCATTGTTG CAGCAGAGTACCTTCTCAATTGGCTTCCTAAAGGCACGCATCAGTGGTCAAGCTTTCTTACTCCTGAAGAACTGGTGCTTATCCTACAGCGTGCTTCTAT CAATGTTAAAGAAATGGCTGGATTCGTTTACAGCCCCTTGACTGGGCGATGGTCTCTATCTGATGATATTTCTGTGAACTTCATAGCCTATGGTACCAAA GATGGTCAATGA
AA sequence Show only first row Show all	>Potri.014G093100.2 pacid=42764203 polypeptide=Potri.014G093100.2.p locus=Potri.014G093100 ID=Potri.014G093100.2.v4.1 annot-version=v4.1 MALKLLSKLRNQNLQITRNRNHHRLVDAARFFSEQPVSNLSTPDDSKFIIKNKQQTTTSSLKQHELAKFAAISDTWWDSEGPFKPLHNMNPTRLAFIRST LCRHFSKDPNCARPFEGLKIVDVGCGGGILSEPLARMGATVTGVDAVEKNINVARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIALEVIEHVAAPA EFCKSLAALAYPGGATVISTINRSMRAYATAIVAAEYLLNWLPKGTHQWSSFLTPEELVLILQRASINVKEMAGFVYSPLTGRWSLSDDISVNFIAYGTK DGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Potri.014G093100 [exp]	0	1
AT1G61000			unknown protein		Potri.017G043000 [exp]	4.24	0.6288
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Potri.009G097600 [exp]	4.58	0.7325	RPB36.2
AT1G73940			unknown protein		Potri.001G453400 [exp]	8.36	0.6976
AT5G12240			unknown protein		Potri.001G274400 [exp]	9.16	0.6332
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Potri.012G045200 [exp]	19.89	0.6372
AT5G07900			Mitochondrial transcription te...		Potri.008G216200 [exp]	42.42	0.5795
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.006G227300 [exp]	53.35	0.6217
AT3G19630			Radical SAM superfamily protei...		Potri.001G294900 [exp]	70.09	0.5619
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.006G131200 [exp]	70.42	0.6115
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	79.59	0.5774

Compare expression of checked genes

Potri.014G093100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.