Plant FIBer expression Database

Potri.014G093150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G166300
[exp]
88 / 4e-21 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G093150.1 pacid=42764164 polypeptide=Potri.014G093150.1.p locus=Potri.014G093150 ID=Potri.014G093150.1.v4.1 annot-version=v4.1
ATGGAGACCATGTGCCCTCCATGCAGCATCATCTTCCAAGCTCTGGGGCTAGCTATTCCACCTCGTATGCACGTTGATCCATCCAAATCTGCTGCTTTCT
ATGGAATTTGGCCTCACGTGAACGACTTTGGGTACTCGATCCCATGCCATGCCTGCTGCGGCCATGGTAACTTCACTGGTTACTGTAGTCCTACGCCTCC
TTGTTCTCATTTTCCACCACCTCAATATCAGTGCTCTCTGGATATATATATCCTCCATATCATGAAGCTGTCCCTGTACAATTTGTTCCTCGTCCACATT
ATTCGATGGACCAGCCAGGTTTTGGATATGACAAGGTCGTCTCTAGAAACAAACATTGCTGTGGGTGCCCAAGTCACACACACCCATAGCAGAAAAATGA
TGAAAGAGTGA
AA sequence
>Potri.014G093150.1 pacid=42764164 polypeptide=Potri.014G093150.1.p locus=Potri.014G093150 ID=Potri.014G093150.1.v4.1 annot-version=v4.1
METMCPPCSIIFQALGLAIPPRMHVDPSKSAAFYGIWPHVNDFGYSIPCHACCGHGNFTGYCSPTPPCSHFPPPQYQCSLDIYILHIMKLSLYNLFLVHI
IRWTSQVLDMTRSSLETNIAVGAQVTHTHSRKMMKE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G093150
[exp]
0 1
Potri.005G134850
[exp]
1.41 0.9799
Potri.006G040201
[exp]
5.09 0.9800
AT1G28300 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like... Potri.004G045800
[exp]
9.38 0.9427
Potri.010G122150
[exp]
10.29 0.9232
AT5G47010 ATUPF1, UPF1, L... LOW-LEVEL BETA-AMYLASE 1, RNA ... Potri.001G148100
[exp]
10.77 0.9150
AT5G14990 unknown protein Potri.010G222200
[exp]
13.96 0.9400
AT5G56270 WRKY ATWRKY2, WRKY2,... ARABIDOPSIS THALIANA WRKY DNA-... Potri.019G053900
[exp]
14.89 0.9407
Potri.005G152000
[exp]
16.73 0.9181
ATMG00310 ATMG00310.1, OR... RNA-directed DNA polymerase (r... Potri.012G064850
[exp]
18.30 0.8948
AT5G19290 alpha/beta-Hydrolases superfam... Potri.010G222300
[exp]
18.57 0.8936

Potri.014G093150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.