Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61590 538 / 0 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G15710 98 / 3e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 97 / 9e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 92 / 2e-20 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 66 / 1e-11 F-box family protein (.1) AT5G42350 55 / 7e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42360 55 / 8e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49610 54 / 1e-07 F-box family protein (.1) AT3G56470 52 / 3e-07 F-box family protein (.1) AT5G43190 50 / 2e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166500 [exp] 752 / 0 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G057100 [exp] 107 / 3e-25 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 104 / 2e-24 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.004G112400 [exp] 103 / 4e-24 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 103 / 4e-24 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 99 / 2e-22 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 98 / 4e-22 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.006G217500 [exp] 76 / 8e-15 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.002G118700 [exp] 72 / 9e-14 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003029 [exp] 586 / 0 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 583 / 0 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031955 [exp] 100 / 7e-23 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 99 / 2e-22 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 88 / 8e-19 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 87 / 2e-18 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10037030 [exp] 85 / 1e-17 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 83 / 3e-17 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007740 [exp] 74 / 7e-14 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 61 / 6e-10 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.014G093200.5 pacid=42762610 polypeptide=Potri.014G093200.5.p locus=Potri.014G093200 ID=Potri.014G093200.5.v4.1 annot-version=v4.1 ATGGAGGGTGAAACATCTTGGGTAAATAATTGTTTTGAGAACCCGACAAGGGACATTGGTGAGTTCGATTCATTTTCTGAACATAGCGATGAAGGAAATA AAGAAGTTAATGCCATTTCAGTTGATTTAATCTTGCCCGATGATCTGCTAGAACGAATCCTAGCCTGTCTCCCCATTGCTAGCATCTTCAGAGCTGGCTG TGTGTGTAAAAGATGGCACGAGATTGTTAGTTCAAGGAGGTTTTTATGGAACTTCTCACCTGTCCTGCCACAAAAACCATGGTATTTTATGTTTACAAGC TCTGACGAACCAGTTGGCTATGCTTTTGATCCTATCCTTCGAAAATGGTTTGGCATTGATCTTCCCTACATCCAAAAGTCCAACTGGTTCATTGCTTCAT CATGCGGCTTGGTTTCCTTCATGGATAACGACAGCAGAAGCGAGTTGTATGTCTGCAACCCTATCACCAAACGCTGCATGAAGCTTCAGGAGCCCCCAGG CTTAAAAGTTTATGATTACAGTGCACTTGCAATTTATGTGAACCGGATATCACATGGTTATACTATATCAATTGTGAAGTCTAAGTTATGCCCTGGAAAT TTTTTCCAATCTGATCTCTCTATCCATATTTATGATTCTGAAACGAGGATGTGGGTAACTTCTTGCACAGAGGTTATGACTGGATGGAGAGGTGGCGATG AGAGTGTGATCTGTGGTGGGGTTTTATACTTTTTGATATATTCTGCAGGAGGTGGTGCCACAGAAACCCGTCATGGTCTCATCAGGTACAATCTATCCAA CAGATCTTCCCATGGCTTGTTGATAAGAAGTTTCATTAAAGTACCTTGTCCTCTTACTTGTGGCCGTCTGATGAATTTGAATGAGAAGCTTGTAATGGTG GGAGGAATTGGTAAACAAGACCGGCCTGACATAATAAAGGGGATTGGCATCTGGGTTCTAAATGGCAAGGACTGGCAAGAGATTGCCCGTATGCCCCACA AGTTCTTCCAAGGATTTGGGGAGTTTGATGAAGTTTTTGCTAGCAGCGGTACAAATAATCATATATACATCCAAAGCTACGGGGCTCCAGCGCTTCTTGT TTTTGACATTAACCAGAAACAATGGAAGTGGTCACAGAAATGCCCAGTGTCAAAGAGGTTCCCACTTCAACTTTTTACTGGGTTTTGCTTTGAACCTAGG CTTGATATGGCACCGTAA
AA sequence Show only first row Show all	>Potri.014G093200.5 pacid=42762610 polypeptide=Potri.014G093200.5.p locus=Potri.014G093200 ID=Potri.014G093200.5.v4.1 annot-version=v4.1 MEGETSWVNNCFENPTRDIGEFDSFSEHSDEGNKEVNAISVDLILPDDLLERILACLPIASIFRAGCVCKRWHEIVSSRRFLWNFSPVLPQKPWYFMFTS SDEPVGYAFDPILRKWFGIDLPYIQKSNWFIASSCGLVSFMDNDSRSELYVCNPITKRCMKLQEPPGLKVYDYSALAIYVNRISHGYTISIVKSKLCPGN FFQSDLSIHIYDSETRMWVTSCTEVMTGWRGGDESVICGGVLYFLIYSAGGGATETRHGLIRYNLSNRSSHGLLIRSFIKVPCPLTCGRLMNLNEKLVMV GGIGKQDRPDIIKGIGIWVLNGKDWQEIARMPHKFFQGFGEFDEVFASSGTNNHIYIQSYGAPALLVFDINQKQWKWSQKCPVSKRFPLQLFTGFCFEPR LDMAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.014G093200 [exp]	0	1
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.005G209800 [exp]	12.00	0.7255
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156200 [exp]	12.96	0.6809
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	13.56	0.7332
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.007G134500 [exp]	16.79	0.7216	MYB.43
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	22.60	0.6899
					Potri.001G135100 [exp]	24.33	0.7101
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G030200 [exp]	24.81	0.6738
AT5G43150			unknown protein		Potri.003G187500 [exp]	25.13	0.6897
AT4G16400			unknown protein		Potri.006G017900 [exp]	26.64	0.6845
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	36.08	0.6903

Compare expression of checked genes

Potri.014G093200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.